A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
104.4
nTPM
Monaco:
318.5
nTPM
Schmiedel:
45.2
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
104.4
HPA sample
nTPM
Classical monocyte nTPM: 72.1
Samples: 6
Max nTPM: 99.9
Min nTPM: 47.2
P10809_1003
47.2
P10809_1020
71.6
P10809_1039
74.6
P10809_1058
76.0
P10809_1080
99.9
P10809_1107
63.4
Intermediate monocyte nTPM: 93.6
Samples: 6
Max nTPM: 107.8
Min nTPM: 80.1
P10809_1004
93.9
P10809_1023
97.5
P10809_1042
107.8
P10809_1061
86.6
P10809_1081
95.8
P10809_1108
80.1
Non-classical monocyte nTPM: 104.4
Samples: 5
Max nTPM: 119.3
Min nTPM: 93.3
P10809_1005
94.7
P10809_1053
119.3
P10809_1072
108.8
P10809_1082
93.3
P10809_1109
105.8
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
318.5
Monaco sample
nTPM
Classical monocyte nTPM: 258.0
Samples: 4
Max nTPM: 339.7
Min nTPM: 223.1
RHH5313_R3680
242.2
RHH5221_R3593
339.7
RHH5250_R3622
227.0
RHH5279_R3651
223.1
Intermediate monocyte nTPM: 301.2
Samples: 4
Max nTPM: 349.9
Min nTPM: 280.0
RHH5314_R3681
282.7
RHH5222_R3594
349.9
RHH5251_R3623
280.0
RHH5280_R3652
292.0
Non-classical monocyte nTPM: 318.6
Samples: 4
Max nTPM: 407.6
Min nTPM: 268.4
RHH5315_R3682
274.1
RHH5223_R3595
324.1
RHH5252_R3624
268.4
RHH5281_R3653
407.6
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
45.2
Schmiedel sample id
TPM
Classical monocyte TPM: 34.5
Samples: 91
Max TPM: 43.8
Min TPM: 26.8
MONOCYTES_1
43.8
MONOCYTES_2
42.9
MONOCYTES_3
40.6
MONOCYTES_4
39.5
MONOCYTES_5
39.0
MONOCYTES_6
39.0
MONOCYTES_7
38.3
MONOCYTES_8
38.3
MONOCYTES_9
38.2
MONOCYTES_10
38.2
MONOCYTES_11
38.2
MONOCYTES_12
37.9
MONOCYTES_13
37.9
MONOCYTES_14
37.9
MONOCYTES_15
37.5
MONOCYTES_16
37.4
MONOCYTES_17
37.3
MONOCYTES_18
37.3
MONOCYTES_19
37.2
MONOCYTES_20
37.1
MONOCYTES_21
37.1
MONOCYTES_22
37.1
MONOCYTES_23
37.1
MONOCYTES_24
36.8
MONOCYTES_25
36.4
MONOCYTES_26
36.2
MONOCYTES_27
36.1
MONOCYTES_28
36.1
MONOCYTES_29
36.1
MONOCYTES_30
36.1
MONOCYTES_31
36.1
MONOCYTES_32
36.0
MONOCYTES_33
35.9
MONOCYTES_34
35.9
MONOCYTES_35
35.2
MONOCYTES_36
35.1
MONOCYTES_37
35.0
MONOCYTES_38
35.0
MONOCYTES_39
34.9
MONOCYTES_40
34.9
MONOCYTES_41
34.8
MONOCYTES_42
34.8
MONOCYTES_43
34.7
MONOCYTES_44
34.6
MONOCYTES_45
34.6
MONOCYTES_46
34.6
MONOCYTES_47
34.5
MONOCYTES_48
34.4
MONOCYTES_49
34.4
MONOCYTES_50
34.3
MONOCYTES_51
34.3
MONOCYTES_52
34.2
MONOCYTES_53
34.2
MONOCYTES_54
34.2
MONOCYTES_55
33.9
MONOCYTES_56
33.8
MONOCYTES_57
33.8
MONOCYTES_58
33.7
MONOCYTES_59
33.5
MONOCYTES_60
33.4
MONOCYTES_61
33.2
MONOCYTES_62
33.1
MONOCYTES_63
33.0
MONOCYTES_64
32.8
MONOCYTES_65
32.7
MONOCYTES_66
32.7
MONOCYTES_67
32.6
MONOCYTES_68
32.5
MONOCYTES_69
32.4
MONOCYTES_70
32.4
MONOCYTES_71
32.2
MONOCYTES_72
32.0
MONOCYTES_73
31.9
MONOCYTES_74
31.8
MONOCYTES_75
31.6
MONOCYTES_76
31.5
MONOCYTES_77
31.4
MONOCYTES_78
30.9
MONOCYTES_79
30.7
MONOCYTES_80
30.6
MONOCYTES_81
30.5
MONOCYTES_82
30.4
MONOCYTES_83
30.4
MONOCYTES_84
30.3
MONOCYTES_85
30.3
MONOCYTES_86
29.6
MONOCYTES_87
29.4
MONOCYTES_88
29.2
MONOCYTES_89
28.8
MONOCYTES_90
28.4
MONOCYTES_91
26.8
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Non-classical monocyte TPM: 45.2
Samples: 90
Max TPM: 58.9
Min TPM: 34.9
M2_1
58.9
M2_2
57.0
M2_3
56.7
M2_4
55.7
M2_5
54.6
M2_6
54.4
M2_7
53.2
M2_8
52.9
M2_9
52.5
M2_10
51.8
M2_11
51.6
M2_12
51.6
M2_13
51.2
M2_14
51.0
M2_15
50.7
M2_16
49.9
M2_17
49.9
M2_18
49.0
M2_19
48.6
M2_20
48.0
M2_21
47.5
M2_22
47.5
M2_23
47.4
M2_24
47.2
M2_25
47.2
M2_26
47.2
M2_27
46.9
M2_28
46.8
M2_29
46.7
M2_30
46.7
M2_31
46.7
M2_32
46.7
M2_33
46.6
M2_34
46.5
M2_35
46.5
M2_36
46.4
M2_37
46.3
M2_38
46.1
M2_39
46.1
M2_40
46.0
M2_41
45.9
M2_42
45.6
M2_43
45.5
M2_44
45.5
M2_45
45.4
M2_46
45.2
M2_47
45.1
M2_48
44.9
M2_49
44.9
M2_50
44.2
M2_51
44.1
M2_52
43.8
M2_53
43.2
M2_54
43.0
M2_55
42.8
M2_56
42.5
M2_57
42.2
M2_58
42.1
M2_59
42.1
M2_60
42.0
M2_61
42.0
M2_62
41.9
M2_63
41.7
M2_64
41.7
M2_65
41.7
M2_66
41.6
M2_67
41.6
M2_68
41.5
M2_69
41.4
M2_70
41.3
M2_71
41.3
M2_72
41.2
M2_73
41.0
M2_74
40.9
M2_75
40.9
M2_76
40.8
M2_77
40.5
M2_78
40.5
M2_79
40.3
M2_80
39.9
M2_81
39.6
M2_82
39.2
M2_83
38.6
M2_84
38.6
M2_85
38.2
M2_86
38.1
M2_87
37.4
M2_88
36.8
M2_89
36.5
M2_90
34.9
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