On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
174.3
nTPM
HPA Brain:
356.8
nTPM
GTEx:
174.3
nTPM
FANTOM5:
229.1
Scaled Tags Per Million
Macaque:
297.6
nTPM
Mouse:
455.4
nTPM
Rat:
439.3
nTPM
Pig:
196.5
nTPM
MIDBRAIN - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - MIDBRAIN, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Inhibitory (GAD1/2) RORB+ K
c-2
Excitatory (VGLUT1) ETV1+ Z...
c-3
Inhibitory (GAD1/2) RORB+ K
c-4
Inhibitory (GAD1/2) RORB+ K
c-5
Unassigned
c-6
Tectum Excitatory (VGLUT2)
c-7
Inhibitory (GAD1/2)
c-8
Inhibitory (GAD1/2) TFAP2B+
c-9
Excitatory (VGLUT2)
c-10
Excitatory (VGLUT2)
c-11
Tectum Inhibitory (GAD1/2)
c-12
Excitatory (VGLUT2) TFAP2B+
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2)
c-15
Tectum Excitatory (VGLUT2)
c-16
Excitatory (VGLUT2)
c-17
Inhibitory (GAD1/2)
c-18
Excitatory (VGLUT2)
c-19
Inhibitory (GAD1/2)
c-20
Inhibitory (GAD1/2)
c-21
Excitatory (VGLUT2)
c-22
Excitatory (VGLUT2)
c-23
Inhibitory (GAD1/2) TFAP2B+
c-24
Inhibitory (GAD1/2)
c-25
Excitatory (VGLUT2) CRH+ CA...
c-26
Inhibitory (GAD1/2) SST+
c-27
Inhibitory (GAD1/2) NPY+
c-28
Inhibitory (GAD1/2) RORB+ K
c-29
Excitatory (VGLUT2) TFAP2B+
c-30
Excitatory (VGLUT2)
c-31
Dopaminergic TH+ LMX1A+ SLC...
c-32
Inhibitory (GAD1/2) PVALB+
c-33
Tegmentum Excitatory (VGLUT...
c-34
Excitatory (VGLUT2) LMX1A+
c-35
Tegmentum Inhibitory (GAD2)...
c-36
TPH2+
c-37
Inhibitory (GAD1/2) CXCL14+
c-38
Excitatory (VGLUT1) SATB2+
c-39
Inhibitory (GAD1/2) RORB+ K
c-40
Excitatory (VGLUT2) MEIS2+
c-41
Inhibitory (GAD1/2) TFAP2B+
c-42
Excitatory (VGLUT2)
c-43
Excitatory (VGLUT1)
c-44
SN Monoaminergic Inhibitory...
c-45
Inhibitory (GAD1/2)
c-46
Excitatory (VGLUT1) GRP+
c-47
Inhibitory (GAD1/2) PVALB+ ...
c-48
Excitatory (VGLUT1)
c-49
Inhibitory (GAD1/2) LAMP5+
c-50
Excitatory (VGLUT2) KIT+
c-51
Excitatory (VGLUT1) SLC5A7+
c-52
Inhibitory (GAD1/2) NOS1+ G...
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - MIDBRAIN, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Microglia
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Astrocytes
c-7
Oligodendrocytes
c-8
Oligodendrocytes
c-9
Oligodendrocytes
c-10
Oligodendrocytes
c-11
Oligodendrocytes
c-12
Astrocytes
c-13
Fibroblasts
c-14
NK-cells & T-cells
c-15
Macrophages
c-16
Ependymal cells
c-17
Capillary endothelial cells
c-18
Pericytes
c-19
Oligodendrocyte progenitor ...
c-20
Immature oligodendrocytes
c-21
Vascular smooth muscle cell
c-22
Oligodendrocyte progenitor ...
c-23
B-cells & Monocytes doublet
c-24
Arterial endothelial cells
c-25
CD44+ Mural cells
c-26
Bergmann glia
c-27
Oligodendrocytes & Lymphocy
c-28
Macrophages & Monocytes
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
356.8
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 314.4
2666
Male, age 74, left hemisphere
370.3
1827
Male, age 72, unknown
366.5
2586
Male, age 75, left hemisphere
356.4
2219
Male, age 76, both hemispheres
308.7
2411
Female, age 72, unknown
305.9
2828
Female, age 72, unknown
303.0
1870
Female, age 42, unknown
299.3
1833
Male, age 53, unknown
285.9
2019
Male, age 18, unknown
282.9
1830
Male, age 51, unknown
265.2
Dorsal raphe nucleus nTPM: 299.9
2298
Female, age 72, unknown
327.7
2047
Male, age 72, unknown
318.0
2750
Male, age 76, both hemispheres
303.0
1828
Male, age 53, unknown
300.5
2016
Female, age 72, unknown
250.6
Inferior colliculus nTPM: 314.4
2097
Female, age 72, unknown
333.3
1848
Female, age 42, unknown
321.9
2849
Male, age 72, unknown
311.6
1890
Male, age 53, unknown
290.7
Median raphe nucleus nTPM: 347.0
2220
Male, age 76, midline
347.0
Periaquaductal grey, anterior nTPM: 356.8
1947
Male, age 18, unknown
376.9
1795
Male, age 51, unknown
373.7
2502
Female, age 75, unknown
319.8
Periaquaductal grey, dorsal nTPM: 278.4
1831
Male, age 72, unknown
302.5
1840
Male, age 53, unknown
290.5
2850
Male, age 76, both hemispheres
279.8
2464
Female, age 72, unknown
240.8
Periaquaductal grey, lateral nTPM: 258.6
2053
Male, age 18, unknown
275.7
2272
Male, age 74, both hemispheres
266.7
2140
Male, age 76, both hemispheres
233.5
Pretectal area nTPM: 326.1
1944
Female, age 72, unknown
429.9
1816
Male, age 51, unknown
413.6
1817
Female, age 42, unknown
389.9
2007
Male, age 72, unknown
378.2
1815
Male, age 53, unknown
354.6
2667
Female, age 75, unknown
316.1
2825
Male, age 18, unknown
292.4
2224
Female, age 72, unknown
272.1
2273
Male, age 74, both hemispheres
258.5
2407
Male, age 75, both hemispheres
241.7
2316
Male, age 76, right hemisphere
240.2
Red nucleus nTPM: 265.8
1821
Female, age 72, unknown
309.6
2725
Female, age 75, unknown
289.2
2584
Male, age 75, left hemisphere
281.2
2785
Male, age 18, unknown
280.3
2588
Male, age 74, left hemisphere
266.2
1904
Male, age 53, unknown
265.4
1954
Female, age 42, unknown
265.1
1865
Male, age 51, unknown
261.3
2769
Male, age 72, unknown
249.8
2227
Male, age 72, unknown
248.5
2503
Female, age 72, unknown
239.1
2823
Male, age 76, right hemisphere
233.9
Substantia nigra nTPM: 345.6
1916
Female, age 42, unknown
425.4
1889
Female, age 72, unknown
393.5
2665
Male, age 74, both hemispheres
388.6
1851
Male, age 51, unknown
353.7
1941
Male, age 53, unknown
351.5
2409
Female, age 72, unknown
337.6
2699
Male, age 18, unknown
313.2
2583
Male, age 75, right hemisphere
302.9
2241
Male, age 72, unknown
298.7
2590
Female, age 75, unknown
291.3
Superior colliculus nTPM: 318.9
2668
Female, age 75, unknown
383.7
1796
Male, age 53, unknown
374.2
2261
Male, age 18, unknown
349.3
2087
Female, age 72, unknown
334.1
1895
Male, age 76, right hemisphere
315.4
2587
Male, age 74, left hemisphere
305.7
1913
Female, age 42, unknown
305.4
1839
Male, age 51, unknown
283.8
2664
Male, age 75, both hemispheres
280.6
1995
Male, age 72, unknown
256.8
Ventral tegmental area nTPM: 339.9
2218
Male, age 76, both hemispheres
383.1
2410
Female, age 72, unknown
368.6
2223
Female, age 72, unknown
345.2
1915
Female, age 42, unknown
340.0
1942
Male, age 51, unknown
321.1
2021
Male, age 53, unknown
281.3
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
174.3
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 174.3
Samples: 183
Max nTPM: 340.4
Min nTPM: 92.7
Std nTPM: 39.1
Median nTPM: 161.2
GTEX-WVLH-0011-R2A-SM-3MJFJ
50-59 years, male
340.4
GTEX-117XS-0011-R2b-SM-GI4VT
60-69 years, male
322.6
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
319.5
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
294.8
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
265.7
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
262.2
GTEX-1PIIG-0011-R2b-SM-F648W
30-39 years, male
258.1
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
253.6
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
251.7
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
250.9
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
243.5
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
242.3
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
241.5
GTEX-WL46-0011-R2A-SM-3LK6O
50-59 years, male
239.9
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
237.7
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
236.1
GTEX-13OW7-0011-R2b-SM-H6Q8E
50-59 years, male
234.3
GTEX-QVJO-0011-R2A-SM-2S1QK
60-69 years, female
233.5
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
230.4
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
226.3
GTEX-1N2EE-0011-R2a-SM-F649F
60-69 years, male
226.1
GTEX-1MJK2-0011-R2b-SM-EXUS5
50-59 years, male
223.0
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
221.6
GTEX-11NUK-0011-R2a-SM-GINAO
50-59 years, male
219.4
GTEX-1JMQJ-0011-R2a-SM-F6493
50-59 years, male
217.4
GTEX-1R9PO-0011-R2a-SM-F2TBH
60-69 years, female
216.3
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
213.4
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
213.0
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
212.5
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
211.0
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
209.9
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
206.0
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
204.4
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
203.5
GTEX-15SHU-0011-R2a-SM-GPRXS
40-49 years, female
202.2
GTEX-1QMI2-0011-R2b-SM-F648R
60-69 years, male
200.2
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
199.5
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
197.1
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
195.3
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
194.7
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
194.1
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
193.9
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
193.5
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
192.2
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
192.2
GTEX-1PPGY-0011-R2b-SM-F33YW
60-69 years, male
191.9
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
191.1
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
188.4
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
186.8
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
186.6
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
186.4
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
185.0
GTEX-ZZPT-0011-R2a-SM-GNTB1
50-59 years, male
184.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
184.0
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
183.6
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
183.1
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
183.1
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
183.0
GTEX-1MCQQ-0011-R2a-SM-F649V
60-69 years, male
182.0
GTEX-111FC-0011-R2a-SM-GIN8S
60-69 years, male
181.1
GTEX-1R9K4-0011-R2b-SM-G8LLF
60-69 years, male
180.6
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
179.4
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
178.8
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
178.5
GTEX-1N2EF-0011-R2b-SM-F6482
60-69 years, male
178.4
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
177.3
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
176.7
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
176.5
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
175.8
GTEX-1192X-0011-R2b-SM-GI4VV
50-59 years, male
174.9
GTEX-1LKK1-0011-R2b-SM-G8OLT
50-59 years, female
174.8
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
174.8
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
174.7
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
172.5
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
171.1
GTEX-1O9I2-0011-R2b-SM-F3K53
50-59 years, male
170.5
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
170.4
GTEX-ZAK1-0011-R2a-SM-GPRX1
50-59 years, female
170.2
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
170.1
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
169.9
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
169.7
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
167.9
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
167.1
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
165.6
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
165.0
GTEX-1RQEC-0011-R2b-SM-EY5ZT
60-69 years, male
164.5
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
162.6
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
161.9
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
161.9
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
161.6
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
161.5
GTEX-13OVL-0011-R2b-SM-H65ZN
50-59 years, male
161.2
GTEX-1117F-0011-R2b-SM-GI4VL
60-69 years, female
160.2
GTEX-1JJ6O-0011-R2a-SM-EY5ZO
60-69 years, male
160.2
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
160.1
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
160.0
GTEX-1N5O9-0011-R2a-SM-G8LM1
60-69 years, male
159.8
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
159.4
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
159.1
GTEX-1KD4Q-0011-R2a-SM-F649I
40-49 years, male
159.0
GTEX-1LSVX-0011-R2a-SM-G8OL9
60-69 years, male
159.0
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
158.8
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
158.6
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
157.8
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
157.4
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
156.8
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
156.7
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
156.6
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
156.5
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
156.3
GTEX-1RDX4-0011-R2b-SM-F649Z
50-59 years, female
155.9
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
155.8
GTEX-1IDJH-0011-R2a-SM-GPI9D
70-79 years, male
155.8
GTEX-1HBPH-0011-R2a-SM-GQ1DS
40-49 years, female
155.6
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
155.2
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
154.9
GTEX-1RQED-0011-R2a-SM-F3K5T
60-69 years, male
154.9
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
154.8
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
154.4
GTEX-1KD5A-0011-R2b-SM-G9EPP
50-59 years, male
154.4
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
153.2
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
152.8
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
152.4
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
152.1
GTEX-1JMPZ-0011-R2a-SM-G8LLS
30-39 years, male
152.0
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
151.9
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
151.4
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
151.1
GTEX-ZYY3-0011-R2a-SM-GNTB2
60-69 years, female
150.9
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
150.6
GTEX-RN5K-0011-R2A-SM-GQ1CA
50-59 years, female
150.4
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
149.9
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
149.9
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
149.8
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
149.2
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
148.9
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
148.7
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
148.3
GTEX-1CB4J-0011-R2a-SM-9WG5N
60-69 years, male
148.1
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
147.8
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
147.7
GTEX-15G19-0011-R2b-SM-H6Q7S
60-69 years, male
147.2
GTEX-11TTK-0011-R2b-SM-GJ3PU
60-69 years, female
146.8
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
146.4
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
145.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
145.5
GTEX-1I19N-0011-R2b-SM-GPRYG
70-79 years, male
144.9
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
144.7
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
144.0
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
143.8
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
143.3
GTEX-ZAJG-0011-R2a-SM-GNTAX
50-59 years, female
143.2
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
143.1
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
143.1
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
141.9
GTEX-1LG7Y-0011-R2b-SM-G8LMM
50-59 years, male
141.9
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
141.5
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
140.3
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
140.1
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
140.1
GTEX-16GPK-0011-R2a-SM-GRR1F
60-69 years, male
139.4
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
139.2
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
139.2
GTEX-1JN1M-0011-R2b-SM-G9EPE
60-69 years, female
139.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
139.2
GTEX-1PWST-0011-R2b-SM-F3K5I
70-79 years, male
139.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
138.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
137.8
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
137.7
GTEX-1P4AB-0011-R2a-SM-F649K
50-59 years, male
137.4
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
134.1
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
133.9
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
132.7
GTEX-12696-0011-R2b-SM-GHWPY
60-69 years, male
131.2
GTEX-1NV5F-0011-R2a-SM-G8LME
60-69 years, female
130.8
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
129.9
GTEX-1NV8Z-0011-R2b-SM-F648N
60-69 years, male
128.5
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
127.8
GTEX-1POEN-0011-R2b-SM-G8LLP
30-39 years, female
127.6
GTEX-1KWVE-0011-R2a-SM-G8OLX
30-39 years, male
126.4
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
118.3
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
117.7
GTEX-X4EP-0011-R2B-SM-3P625
60-69 years, female
92.7
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
297.6
Macaque sample
Sample description
nTPM
Substantia nigra nTPM: 229.9
Samples: 1
Max nTPM: 229.9
Min nTPM: 229.9
Sample A
229.9
Midbrain nTPM: 233.6
Samples: 1
Max nTPM: 233.6
Min nTPM: 233.6
Sample A
233.6
Superior colliculi nTPM: 297.6
Samples: 1
Max nTPM: 297.6
Min nTPM: 297.6
Sample A
297.6
MIDBRAIN - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
196.5
Pig sample
Sample description
nTPM
Substantia nigra nTPM: 191.3
Samples: 3
Max nTPM: 229.4
Min nTPM: 147.0
Sample A
Female
229.4
Sample B
Female
147.0
Sample C
Male
197.5
Midbrain nTPM: 196.5
Samples: 3
Max nTPM: 229.8
Min nTPM: 153.4
Sample B
Female
153.4
Sample C
Male
229.8
Sample D
Male
206.2
Periaqueductal gray nTPM: 140.0
Samples: 3
Max nTPM: 163.5
Min nTPM: 118.6
Sample B
Female
138.0
Sample C
Male
163.5
Sample D
Male
118.6
Superior colliculi nTPM: 193.9
Samples: 4
Max nTPM: 223.7
Min nTPM: 169.3
Sample A
Female
223.7
Sample B
Female
169.3
Sample C
Male
196.7
Sample D
Male
185.7
MIDBRAIN - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
455.4
Mouse sample
Sample description
nTPM
Midbrain nTPM: 455.4
Samples: 4
Max nTPM: 463.5
Min nTPM: 443.8
Sample A
443.8
Sample B
459.8
Sample C
454.6
Sample D
463.5
MIDBRAIN - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
439.3
Rat sample
Sample description
nTPM
Midbrain nTPM: 439.3
Samples: 4
Max nTPM: 444.6
Min nTPM: 427.9
Sample A
441.6
Sample A
444.6
Sample A
443.0
Sample A
427.9
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The Human Protein Atlas project is funded
