MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:174.3 nTPM
HPA Brain:355.6 nTPM
GTEx:174.3 nTPM
FANTOM5:229.1 Scaled Tags Per Million
Pig:195.7 nTPM
Mouse:318.9 nTPM
Allen mouse:6.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 355.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 313.4
2666 Male, age 74, left hemisphere 369.0
1827 Male, age 72, unknown 365.3
2586 Male, age 75, left hemisphere 354.8
2219 Male, age 76, both hemispheres 308.1
2411 Female, age 72, unknown 305.0
2828 Female, age 72, unknown 301.9
1870 Female, age 42, unknown 298.4
1833 Male, age 53, unknown 285.0
2019 Male, age 18, unknown 282.0
1830 Male, age 51, unknown 264.4
Dorsal raphe nucleus
nTPM: 299.0
2298 Female, age 72, unknown 326.5
2047 Male, age 72, unknown 317.0
2750 Male, age 76, both hemispheres 302.4
1828 Male, age 53, unknown 299.5
2016 Female, age 72, unknown 249.6
Inferior colliculus
nTPM: 313.3
2097 Female, age 72, unknown 332.2
1848 Female, age 42, unknown 320.8
2849 Male, age 72, unknown 310.5
1890 Male, age 53, unknown 289.7
Median raphe nucleus
nTPM: 346.4
2220 Male, age 76, midline 346.4
Periaquaductal grey, anterior
nTPM: 355.6
1947 Male, age 18, unknown 375.7
1795 Male, age 51, unknown 372.4
2502 Female, age 75, unknown 318.7
Periaquaductal grey, dorsal
nTPM: 277.6
1831 Male, age 72, unknown 301.5
1840 Male, age 53, unknown 289.6
2850 Male, age 76, both hemispheres 279.1
2464 Female, age 72, unknown 240.0
Periaquaductal grey, lateral
nTPM: 257.8
2053 Male, age 18, unknown 274.7
2272 Male, age 74, both hemispheres 265.6
2140 Male, age 76, both hemispheres 232.9
Pretectal area
nTPM: 325.0
1944 Female, age 72, unknown 428.5
1816 Male, age 51, unknown 412.5
1817 Female, age 42, unknown 388.6
2007 Male, age 72, unknown 376.9
1815 Male, age 53, unknown 353.6
2667 Female, age 75, unknown 315.1
2825 Male, age 18, unknown 291.4
2224 Female, age 72, unknown 271.1
2273 Male, age 74, both hemispheres 257.5
2407 Male, age 75, both hemispheres 240.5
2316 Male, age 76, right hemisphere 239.7
Red nucleus
nTPM: 264.9
1821 Female, age 72, unknown 308.6
2725 Female, age 75, unknown 288.2
2584 Male, age 75, left hemisphere 279.9
2785 Male, age 18, unknown 279.3
2588 Male, age 74, left hemisphere 265.5
1904 Male, age 53, unknown 264.3
1954 Female, age 42, unknown 264.2
1865 Male, age 51, unknown 260.4
2769 Male, age 72, unknown 248.9
2227 Male, age 72, unknown 247.8
2503 Female, age 72, unknown 238.4
2823 Male, age 76, right hemisphere 233.4
Substantia nigra
nTPM: 344.4
1916 Female, age 42, unknown 423.6
1889 Female, age 72, unknown 392.0
2665 Male, age 74, both hemispheres 387.1
1851 Male, age 51, unknown 352.5
1941 Male, age 53, unknown 350.5
2409 Female, age 72, unknown 336.6
2699 Male, age 18, unknown 312.0
2583 Male, age 75, right hemisphere 301.7
2241 Male, age 72, unknown 297.9
2590 Female, age 75, unknown 290.4
Superior colliculus
nTPM: 317.8
2668 Female, age 75, unknown 382.3
1796 Male, age 53, unknown 372.9
2261 Male, age 18, unknown 348.1
2087 Female, age 72, unknown 333.0
1895 Male, age 76, right hemisphere 314.9
2587 Male, age 74, left hemisphere 304.6
1913 Female, age 42, unknown 304.2
1839 Male, age 51, unknown 282.9
2664 Male, age 75, both hemispheres 279.2
1995 Male, age 72, unknown 255.9
Ventral tegmental area
nTPM: 338.8
2218 Male, age 76, both hemispheres 382.4
2410 Female, age 72, unknown 367.2
2223 Female, age 72, unknown 344.0
1915 Female, age 42, unknown 338.8
1942 Male, age 51, unknown 320.0
2021 Male, age 53, unknown 280.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 174.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 174.3
Samples: 183

Max nTPM: 340.4
Min nTPM: 92.7
Std nTPM: 39.1
Median nTPM: 161.2
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 340.4
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 322.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 319.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 294.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 265.7
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 262.2
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 258.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 253.6
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 251.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 250.9
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 243.5
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 229.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 229.1
FF:10158-103A5 76 years, female 229.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 195.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 173.8
Samples: 4

Max nTPM: 228.0
Min nTPM: 123.9
Sample A Female 228.0
Sample B Female 146.5
Sample C Male 196.6
Sample D Male 123.9
Midbrain
nTPM: 195.7
Samples: 4

Max nTPM: 229.1
Min nTPM: 152.9
Sample A Female 194.8
Sample B Female 152.9
Sample C Male 229.1
Sample D Male 205.8
Periaqueductal gray
nTPM: 139.7
Samples: 3

Max nTPM: 163.2
Min nTPM: 118.4
Sample B Female 137.6
Sample C Male 163.2
Sample D Male 118.4
Superior colliculi
nTPM: 192.8
Samples: 4

Max nTPM: 222.2
Min nTPM: 168.6
Sample A Female 222.2
Sample B Female 168.6
Sample C Male 195.7
Sample D Male 184.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 318.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 318.9
Samples: 4

Max nTPM: 328.6
Min nTPM: 312.9
Sample A Male 312.9
Sample B Male 313.2
Sample C Female 328.6
Sample D Female 320.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 6.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.7
61413 Antisense, RP_040407_01_C10, Mouse strain C57BL/6J (56 days, male) 13.0
70786827 Antisense, RP_050706_03_D02, Mouse strain C57BL/6J (56 days, male) 3.8
68203457 Antisense, RP_041208_01_A04, Mouse strain C57BL/6J (56 days, male) 3.3

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo