On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
76.9
nTPM
HPA Brain:
85.8
nTPM
GTEx:
76.9
nTPM
FANTOM5:
75.5
Scaled Tags Per Million
Macaque:
275.6
nTPM
Mouse:
105.6
nTPM
Rat:
167.9
nTPM
Pig:
156.4
nTPM
SPINAL CORD - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - SPINAL CORD, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Excitatory (VGLUT1) ETV1+ Z...
c-2
Excitatory (VGLUT2) SST+ GR...
c-3
Excitatory (VGLUT2)
c-4
Excitatory (VGLUT2) SST+ CX...
c-5
Excitatory (VGLUT2) SST+ TA...
c-6
Excitatory (VGLUT2) SST+ CA...
c-7
Excitatory (VGLUT2) SST+
c-8
Excitatory (VGLUT2) CXCL14+
c-9
Excitatory (VGLUT2) SST+
c-10
Inhibitory (GAD1/2) SLC6A5+...
c-11
Inhibitory (GAD1/2) PENK+ E...
c-12
Inhibitory (GAD1/2) SLC6A5+...
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2) CALB1+
c-15
Inhibitory (GAD1/2) SLC6A5+...
c-16
CALB1+ TRH+
c-17
Inhibitory (GAD1/2) SLC6A5+
c-18
Inhibitory (GAD1/2) SLC6A5+...
c-19
Inhibitory (GAD1/2) SLC6A5+...
c-20
Excitatory (VGLUT2) PENK+ T...
c-21
Inhibitory (GAD2) SLC6A5+ N
c-22
Inhibitory (GAD1/2) TAC1+ K...
c-23
Inhibitory (GAD1/2) SLC6A5+...
c-24
Excitatory (VGLUT2) TAC1+
c-25
Excitatory (VGLUT2)
c-26
Inhibitory (GAD1/2) SLC6A5+
c-27
Excitatory (VGLUT2) SST+ CA...
c-28
Inhibitory (GAD1/2) SLC6A5+...
c-29
Unassigned
c-30
Excitatory (VGLUT2) PENK+
c-31
Inhibitory (GAD1/2) PVALB+ ...
c-32
Excitatory (VGLUT2) PENK+ S...
c-33
Excitatory (VGLUT2)
c-34
Excitatory (VGLUT2) SST+ TA...
c-35
Excitatory (VGLUT2)
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - SPINAL CORD, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Oligodendrocytes
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Oligodendrocytes
c-7
Microglia
c-8
Astrocytes (CD44+)
c-9
Astrocytes (CD44+)
c-10
Astrocytes
c-11
Lymphocytes
c-12
Vascular endothelial cells
c-13
Microglia (SPP1+ HIF1A+)
c-14
Ependymal cells
c-15
Oligodendrocyte & OPC doubl
c-16
Pericytes
c-17
Fibroblasts
c-18
Immature oligodendrocytes
c-19
Macrophages
c-20
Myelinating schwann cells
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SPINAL CORD - PROTEINTALKS DB MS
Median intensity
19094
Sample
Intensity
Spinal cord_01
6417
Spinal cord_02
7248
Spinal cord_03
16530
Spinal cord_04
30075
Spinal cord_05
26640
Spinal cord_06
13613
Spinal cord_07
21659
Spinal cord_08
30569
SPINAL CORD - HPA Brain Stereo-seq
SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
85.8
Sample id
Sample description
nTPM
Anterior funiculus (white matter) nTPM: 84.4
2819
Male, age 47, both hemispheres
110.5
2193
Male, age 75, both hemispheres
99.9
2734
Male, age 80, both hemispheres
64.6
2818
Female, age 79, both hemispheres
62.4
Cervical spinal cord, central gray nTPM: 71.6
1981
Female, age 72, midline
94.6
2194
Female, age 79, both hemispheres
69.8
2048
Male, age 55, midline
67.5
2565
Male, age 75, midline
67.2
2816
Male, age 47, midline
59.0
Cervical spinal cord, dorsal horn nTPM: 85.8
2173
Female, age 72, unknown
114.2
2296
Male, age 66, both hemispheres
96.5
2069
Male, age 47, both hemispheres
94.7
2297
Male, age 75, both hemispheres
77.7
1877
Male, age 55, unknown
69.0
2721
Male, age 90, both hemispheres
62.6
Cervical spinal cord, ventral horn nTPM: 72.8
2068
Male, age 55, unknown
88.8
2098
Female, age 72, unknown
78.3
2480
Male, age 75, both hemispheres
77.2
2820
Female, age 79, both hemispheres
65.5
2295
Male, age 66, both hemispheres
65.1
2809
Male, age 90, both hemispheres
61.9
Dorsal funiculus (white matter) nTPM: 78.1
2128
Male, age 75, both hemispheres
99.3
2810
Male, age 90, both hemispheres
88.4
2812
Male, age 66, both hemispheres
83.9
2817
Male, age 47, both hemispheres
60.0
2064
Female, age 79, both hemispheres
59.1
Lateral funiculus (white matter) nTPM: 85.2
2099
Male, age 90, both hemispheres
113.4
2192
Male, age 75, both hemispheres
79.5
2094
Female, age 79, both hemispheres
74.3
2294
Male, age 66, both hemispheres
73.7
SPINAL CORD - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
76.9
GTEx sample id
Sample description
nTPM
Brain - Spinal cord (cervical c-1) Average nTPM: 76.9
Samples: 204
Max nTPM: 154.5
Min nTPM: 49.9
Std nTPM: 15.7
Median nTPM: 74.4
GTEX-1IKJJ-0011-R9a-SM-ARZLI
60-69 years, male
154.5
GTEX-1ICLZ-0011-R9a-SM-ARL7E
60-69 years, male
139.6
GTEX-1GN73-0011-R9a-SM-CKZO5
60-69 years, male
132.0
GTEX-1EKGG-0011-R9a-SM-CMKFV
60-69 years, male
126.0
GTEX-12WSI-0011-R9b-SM-GHWOU
50-59 years, male
119.2
GTEX-1HFI6-0011-R9b-SM-CMKH4
40-49 years, male
116.6
GTEX-QVJO-0011-R9A-SM-2S1QH
60-69 years, female
112.9
GTEX-1GZ4I-0011-R9b-SM-B2LY8
50-59 years, male
109.7
GTEX-1LVA9-0011-R9a-SM-EYYWF
50-59 years, male
108.2
GTEX-1F6I4-0011-R9a-SM-CMKFU
60-69 years, male
107.0
GTEX-1H3O1-0011-R9b-SM-CM2SQ
60-69 years, male
106.2
GTEX-1JMQL-0011-R9b-SM-G8LLH
50-59 years, female
104.8
GTEX-13FLV-0011-R9b-SM-5L3DA
50-59 years, male
101.5
GTEX-1B933-0011-R9a-SM-79OOR
50-59 years, female
98.9
GTEX-13SLX-0011-R9b-SM-5SI6X
50-59 years, female
98.3
GTEX-12WSD-0011-R9a-SM-5GU6W
60-69 years, female
98.1
GTEX-1IY9M-0011-R9b-SM-D3L8J
60-69 years, male
97.9
GTEX-WVLH-0011-R9A-SM-H7OHH
50-59 years, male
97.4
GTEX-13NYS-0011-R9b-SM-5MR44
60-69 years, male
97.2
GTEX-14BIM-0011-R9a-SM-6LLJL
60-69 years, female
96.8
GTEX-12126-0011-R9b-SM-5BC6P
20-29 years, male
96.4
GTEX-11ZUS-0011-R9b-SM-5BC76
30-39 years, male
96.3
GTEX-13FTY-0011-R9b-SM-5KM2U
40-49 years, female
96.3
GTEX-14E7W-0011-R9a-SM-62LE6
70-79 years, male
92.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3
60-69 years, male
92.4
GTEX-13VXU-0011-R9b-SM-5SI73
50-59 years, male
91.6
GTEX-1POEN-0011-R9b-SM-G8LL1
30-39 years, female
91.6
GTEX-1I1GS-0011-R9b-SM-CMKHF
60-69 years, male
91.2
GTEX-1KANB-0011-R9b-SM-EZ6MO
50-59 years, male
91.1
GTEX-117XS-0011-R9b-SM-GHWOG
60-69 years, male
91.0
GTEX-15SHU-0011-R9a-SM-GNIOE
40-49 years, female
90.5
GTEX-13OVJ-0011-R9b-SM-5L3GD
50-59 years, female
90.4
GTEX-1LVAO-0011-R9a-SM-EZ6MY
60-69 years, male
90.3
GTEX-13NYB-0011-R9b-SM-5MR5P
40-49 years, male
90.0
GTEX-117YW-0011-R9a-SM-GHWPQ
50-59 years, male
89.1
GTEX-1PPGY-0011-R9a-SM-G8LMR
60-69 years, male
89.1
GTEX-14JIY-0011-R9a-SM-6EU34
60-69 years, male
88.6
GTEX-1EU9M-0011-R9a-SM-9WG61
60-69 years, male
87.6
GTEX-113JC-0011-R9a-SM-H6Q8K
50-59 years, female
87.2
GTEX-13112-0011-R9b-SM-GHWOV
50-59 years, male
87.2
GTEX-1HBPH-0011-R9a-SM-CMKH3
40-49 years, female
87.2
GTEX-1192X-0011-R9b-SM-DO934
50-59 years, male
86.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF
60-69 years, female
86.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1
50-59 years, female
86.0
GTEX-11GSP-0011-R9b-SM-5NQ77
60-69 years, female
85.9
GTEX-1HBPI-0011-R9b-SM-ARL76
50-59 years, male
85.7
GTEX-1IDJH-0011-R9a-SM-ADEIN
70-79 years, male
85.5
GTEX-1H1ZS-0011-R9a-SM-CM2SO
70-79 years, male
85.2
GTEX-1I1CD-0011-R9a-SM-CMKHB
60-69 years, female
85.1
GTEX-1A8G7-0011-R9b-SM-7IGQH
60-69 years, male
84.5
GTEX-1O9I2-0011-R9b-SM-G8OKW
50-59 years, male
84.4
GTEX-ZZPT-0011-R9a-SM-GOQYS
50-59 years, male
84.4
GTEX-1MJK2-0011-R9b-SM-EZ6MZ
50-59 years, male
84.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP
50-59 years, male
83.8
GTEX-1JN1M-0011-R9a-SM-EZ6MR
60-69 years, female
83.4
GTEX-14E6C-0011-R9a-SM-6EU33
40-49 years, male
83.1
GTEX-11UD2-0011-R9b-SM-DO926
50-59 years, male
82.6
GTEX-13OVL-0011-R9a-SM-5P9GX
50-59 years, male
82.5
GTEX-131YS-0011-R9b-SM-5EQLY
60-69 years, female
82.1
GTEX-1CAMQ-0011-R9a-SM-9WG5Z
40-49 years, male
82.1
GTEX-1MCQQ-0011-R9b-SM-G8OKM
60-69 years, male
81.9
GTEX-PWO3-0011-R9A-SM-EVR2V
60-69 years, female
81.9
GTEX-1JMQJ-0011-R9b-SM-G8OKN
50-59 years, male
81.7
GTEX-1IGQW-0011-R9b-SM-D4P25
60-69 years, male
81.1
GTEX-1RAZS-0011-R9b-SM-G8OMS
50-59 years, male
80.8
GTEX-1J8EW-0011-R9b-SM-D4P2F
60-69 years, female
80.7
GTEX-1R9PO-0011-R9a-SM-G8LKP
60-69 years, female
80.5
GTEX-1H3NZ-0011-R9a-SM-ADEH7
60-69 years, male
80.0
GTEX-1B8L1-0011-R9b-SM-9WG5U
60-69 years, male
79.9
GTEX-1GTWX-0011-R9a-SM-ADEH4
60-69 years, male
79.7
GTEX-X4EP-0011-R9B-SM-4QASI
60-69 years, female
79.7
GTEX-ZVZQ-0011-R9a-SM-51MRH
60-69 years, female
79.6
GTEX-1HSMO-0011-R9b-SM-CM2T2
60-69 years, male
79.5
GTEX-14BMV-0011-R9b-SM-5ZZUA
50-59 years, male
79.4
GTEX-14PN4-0011-R9a-SM-6LLH9
50-59 years, male
79.3
GTEX-12WSC-0011-R9a-SM-5GU4U
50-59 years, male
79.1
GTEX-11ZTS-0011-R9b-SM-DO93Q
60-69 years, female
79.0
GTEX-11ZVC-0011-R9a-SM-57WC5
50-59 years, female
78.8
GTEX-145LU-0011-R9b-SM-5SI66
50-59 years, male
78.6
GTEX-16NPV-0011-R9b-SM-79ONF
50-59 years, female
78.4
GTEX-11GSO-0011-R9b-SM-GI4VN
60-69 years, male
78.1
GTEX-1JMPZ-0011-R9a-SM-G8OLH
30-39 years, male
78.1
GTEX-1H23P-0011-R9a-SM-CM2T1
60-69 years, male
78.0
GTEX-1J8Q2-0011-R9b-SM-GPRYH
60-69 years, male
77.7
GTEX-139UW-0011-R9b-SM-5LZYT
60-69 years, male
77.5
GTEX-1A32A-0011-R9b-SM-7MGXD
50-59 years, female
77.5
GTEX-14JFF-0011-R9b-SM-G9ERJ
60-69 years, male
77.4
GTEX-NPJ7-0011-R9a-SM-G8W5X
60-69 years, female
77.1
GTEX-14PJM-0011-R9b-SM-6EU35
50-59 years, female
76.8
GTEX-YFC4-0011-R9a-SM-4SOK4
40-49 years, female
76.7
GTEX-1PWST-0011-R9a-SM-G8OMQ
70-79 years, male
76.4
GTEX-11ZU8-0011-R9b-SM-GHWOL
60-69 years, male
76.3
GTEX-1LH75-0011-R9b-SM-EY5Y9
50-59 years, female
75.8
GTEX-1LSNL-0011-R9b-SM-EYYWK
50-59 years, male
75.8
GTEX-1JMLX-0011-R9a-SM-EYYXM
50-59 years, male
75.5
GTEX-WL46-0011-R9A-SM-3MJFP
50-59 years, male
75.4
GTEX-1QP6S-0011-R9a-SM-G8LMO
40-49 years, male
75.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP
60-69 years, male
75.1
GTEX-1CB4H-0011-R9a-SM-CKZNL
60-69 years, female
75.0
GTEX-1PIIG-0011-R9b-SM-G8OLU
30-39 years, male
75.0
GTEX-1KD4Q-0011-R9a-SM-G8LLU
40-49 years, male
74.8
GTEX-14ABY-0011-R9a-SM-5PNZK
50-59 years, male
74.6
GTEX-1GZHY-0011-R9a-SM-9WG5R
50-59 years, female
74.2
GTEX-13FXS-0011-R9a-SM-5K7UI
50-59 years, male
74.0
GTEX-ZE9C-0011-R9a-SM-4WWCY
60-69 years, male
73.9
GTEX-11NUK-0011-R9a-SM-GI4XG
50-59 years, male
73.7
GTEX-13N1W-0011-R9b-SM-5MR4R
70-79 years, male
73.2
GTEX-13PLJ-0011-R9b-SM-5O9DV
60-69 years, female
73.2
GTEX-1F88F-0011-R9b-SM-9WG7L
60-69 years, female
73.1
GTEX-147GR-0011-R9a-SM-5S2UY
60-69 years, male
73.0
GTEX-11DZ1-0011-R9a-SM-DO933
50-59 years, male
72.9
GTEX-131XW-0011-R9a-SM-5N9EO
50-59 years, female
72.8
GTEX-1I1GV-0011-R9b-SM-ARZLE
60-69 years, male
72.7
GTEX-1CAV2-0011-R9b-SM-9WG5M
40-49 years, female
72.6
GTEX-T6MN-0011-R9A-SM-32QOZ
50-59 years, male
72.4
GTEX-15G19-0011-R9b-SM-7KUEE
60-69 years, male
71.6
GTEX-1GN2E-0011-R9b-SM-9WG7F
60-69 years, male
71.4
GTEX-13PVQ-0011-R9b-SM-5LU3B
50-59 years, male
71.0
GTEX-111VG-0011-R9b-SM-GHWOB
60-69 years, male
70.9
GTEX-TSE9-0011-R9A-SM-3DB7Q
60-69 years, female
70.9
GTEX-11NV4-0011-R9a-SM-GHWPP
60-69 years, male
70.7
GTEX-13G51-0011-R9b-SM-GHWPS
60-69 years, male
70.7
GTEX-15DDE-0011-R9b-SM-6M46U
50-59 years, female
70.6
GTEX-1I19N-0011-R9a-SM-CMKHN
70-79 years, male
70.6
GTEX-1GF9V-0011-R9a-SM-CL53K
60-69 years, male
70.5
GTEX-12WSH-0011-R9b-SM-5LZUG
50-59 years, male
70.3
GTEX-13X6I-0011-R9b-SM-5PNZJ
60-69 years, male
69.9
GTEX-1R46S-0011-R9a-SM-EZ6N7
60-69 years, female
69.7
GTEX-1EH9U-0011-R9b-SM-9WG5T
60-69 years, male
69.4
GTEX-12584-0011-R9b-SM-GI4WC
40-49 years, male
69.3
GTEX-17EVQ-0011-R9b-SM-79OJY
70-79 years, male
69.2
GTEX-13NZA-0011-R9b-SM-5MR5I
60-69 years, male
68.8
GTEX-1LSVX-0011-R9b-SM-G8LL2
60-69 years, male
68.4
GTEX-1NV8Z-0011-R9b-SM-G8OME
60-69 years, male
68.4
GTEX-13QIC-0011-R9a-SM-GI4WO
60-69 years, female
68.3
GTEX-15EO6-0011-R9a-SM-6PALG
50-59 years, male
68.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L
70-79 years, female
68.3
GTEX-ZV68-0011-R9b-SM-GNTB9
50-59 years, female
68.0
GTEX-14BIN-0011-R9a-SM-5SI76
50-59 years, female
67.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY
60-69 years, male
67.8
GTEX-1RDX4-0011-R9b-SM-G8LMG
50-59 years, female
67.8
GTEX-1HGF4-0011-R9a-SM-ADEH9
60-69 years, male
67.7
GTEX-1C6VQ-0011-R9a-SM-7SB85
50-59 years, male
67.6
GTEX-NL4W-0011-R9a-SM-2I3G1
50-59 years, male
67.5
GTEX-15DYW-0011-R9b-SM-6PALB
60-69 years, female
67.1
GTEX-1I1HK-0011-R9a-SM-CMKHK
60-69 years, male
67.1
GTEX-1212Z-0011-R9b-SM-GHWPM
60-69 years, male
66.6
GTEX-11EMC-0011-R9b-SM-DO921
60-69 years, female
66.4
GTEX-1F52S-0011-R9a-SM-9WG62
60-69 years, female
66.4
GTEX-1GN1U-0011-R9b-SM-CMKFW
50-59 years, female
66.4
GTEX-ZAJG-0011-R9a-SM-GNTAY
50-59 years, female
66.4
GTEX-11DXW-0011-R9a-SM-GHWOE
40-49 years, male
66.1
GTEX-1HR98-0011-R9b-SM-ARL79
60-69 years, male
66.1
GTEX-1LG7Y-0011-R9a-SM-G8LMA
50-59 years, male
66.0
GTEX-1N5O9-0011-R9a-SM-G8LLD
60-69 years, male
66.0
GTEX-1269C-0011-R9b-SM-GI4WM
60-69 years, female
65.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A
40-49 years, male
65.8
GTEX-1QMI2-0011-R9a-SM-G8ON7
60-69 years, male
65.8
GTEX-15ER7-0011-R9b-SM-6PALF
20-29 years, female
65.6
GTEX-13JUV-0011-R9a-SM-5LZX3
40-49 years, female
65.5
GTEX-148VJ-0011-R9b-SM-5SI77
70-79 years, male
65.5
GTEX-14BIL-0011-R9a-SM-5SI7A
50-59 years, male
65.5
GTEX-16Z82-0011-R9a-SM-7DUFA
60-69 years, male
65.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ
70-79 years, male
65.4
GTEX-QDT8-0011-R9A-SM-CYPRD
30-39 years, female
65.4
GTEX-14PJO-0011-R9b-SM-62LE9
60-69 years, male
64.7
GTEX-11WQK-0011-R9b-SM-5BC6N
50-59 years, male
64.3
GTEX-13O1R-0011-R9b-SM-5KM33
60-69 years, male
64.2
GTEX-1C6VS-0011-R9b-SM-9WG5W
60-69 years, male
64.2
GTEX-15UF6-0011-R9b-SM-GOQZG
70-79 years, female
64.0
GTEX-12696-0011-R9a-SM-GHWPX
60-69 years, male
63.7
GTEX-1LKK1-0011-R9a-SM-G8OLY
50-59 years, female
63.7
GTEX-ZAB4-0011-R9a-SM-4SOKG
40-49 years, male
63.6
GTEX-1H1DF-0011-R9b-SM-CM2RN
40-49 years, female
63.3
GTEX-1J1OQ-0011-R9b-SM-GRR22
40-49 years, female
63.2
GTEX-11ONC-0011-R9b-SM-5NQ8J
60-69 years, male
62.9
GTEX-13SLW-0011-R9a-SM-5O9BT
70-79 years, male
62.8
GTEX-YJ89-0011-R9a-SM-4SOK7
60-69 years, male
62.7
GTEX-1A8G6-0011-R9a-SM-GOQZR
60-69 years, male
62.4
GTEX-13N2G-0011-R9b-SM-5MR4E
60-69 years, male
62.2
GTEX-XMD1-0011-R9A-SM-4AT49
60-69 years, male
62.2
GTEX-13S7M-0011-R9a-SM-5O9DW
60-69 years, female
61.8
GTEX-13CZV-0011-R9a-SM-5LZXT
60-69 years, male
61.5
GTEX-1HBPM-0011-R9b-SM-ARL7C
60-69 years, female
61.5
GTEX-139T4-0011-R9b-SM-5HL6S
50-59 years, female
61.1
GTEX-16GPK-0011-R9a-SM-GPI9P
60-69 years, male
60.5
GTEX-1IL2U-0011-R9a-SM-GPRYC
60-69 years, male
60.3
GTEX-1H2FU-0011-R9b-SM-CE6S4
60-69 years, female
59.4
GTEX-15DCD-0011-R9b-SM-7KUED
70-79 years, female
59.2
GTEX-13CIG-0011-R9a-SM-5K7VU
50-59 years, male
58.3
GTEX-1H1DG-0011-R9b-SM-ACKVB
70-79 years, male
58.1
GTEX-OHPN-0011-R9A-SM-5TDEJ
60-69 years, female
58.1
GTEX-1JMOU-0011-R9b-SM-EY5YI
60-69 years, female
56.9
GTEX-1GF9W-0011-R9b-SM-9WG7J
60-69 years, male
56.8
GTEX-ZF28-0011-R9a-SM-4WWDY
60-69 years, male
56.3
GTEX-XLM4-0011-R9A-SM-4AT45
60-69 years, male
56.1
GTEX-13PL6-0011-R9b-SM-5O9CH
40-49 years, female
55.7
GTEX-OXRO-0011-R9A-SM-3NB1X
60-69 years, female
54.3
GTEX-13OW5-0011-R9b-SM-5O9CL
60-69 years, male
54.0
GTEX-13QJC-0011-R9b-SM-5PNX3
60-69 years, female
53.2
GTEX-T5JC-0011-R9A-SM-32PLV
20-29 years, male
53.0
GTEX-1JN6P-0011-R9a-SM-G8LM9
60-69 years, male
52.3
GTEX-16XZZ-0011-R9b-SM-7DHKX
60-69 years, male
50.8
GTEX-15CHQ-0011-R9a-SM-6LLHX
60-69 years, male
49.9
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SPINAL CORD - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
275.6
Macaque sample
Sample description
nTPM
Dorsal spinal cord nTPM: 159.0
Samples: 2
Max nTPM: 164.7
Min nTPM: 153.3
Sample A
153.3
Sample B
164.7
Ventral spinal cord nTPM: 275.6
Samples: 1
Max nTPM: 275.6
Min nTPM: 275.6
Sample A
275.6
SPINAL CORD - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
156.4
Pig sample
Sample description
nTPM
Dorsal spinal cord nTPM: 113.7
Samples: 4
Max nTPM: 120.2
Min nTPM: 109.4
Sample A
Female
120.2
Sample B
Female
113.5
Sample C
Male
109.4
Sample D
Male
111.5
Ventral spinal cord nTPM: 156.4
Samples: 4
Max nTPM: 180.0
Min nTPM: 142.1
Sample A
Female
152.6
Sample B
Female
180.0
Sample C
Male
151.0
Sample D
Male
142.1
SPINAL CORD - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
105.6
Mouse sample
Sample description
nTPM
Spinal cord nTPM: 105.6
Samples: 4
Max nTPM: 122.2
Min nTPM: 93.6
Sample A
122.2
Sample B
93.6
Sample C
99.4
Sample D
107.2
SPINAL CORD - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
167.9
Rat sample
Sample description
nTPM
Ventral spinal cord nTPM: 167.9
Samples: 4
Max nTPM: 180.7
Min nTPM: 149.3
Sample A
174.3
Sample A
167.3
Sample A
180.7
Sample A
149.3
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The Human Protein Atlas project is funded
