A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
127.0
nTPM
Monaco:
337.9
nTPM
Schmiedel:
40.8
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
127.0
HPA sample
nTPM
Memory B-cell nTPM: 127.0
Samples: 6
Max nTPM: 147.0
Min nTPM: 101.7
P10809_1017
101.7
P10809_1025
139.2
P10809_1044
147.0
P10809_1063
126.0
P10809_1092
128.5
P10809_1105
119.6
Naive B-cell nTPM: 97.1
Samples: 6
Max nTPM: 216.3
Min nTPM: 47.3
P10809_1011
47.3
P10809_1029
100.1
P10809_1048
216.3
P10809_1067
72.9
P10809_1091
73.6
P10809_1104
72.3
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
337.9
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 184.0
Samples: 4
Max nTPM: 257.1
Min nTPM: 110.0
RHH5310_R3677
257.1
RHH5218_R3590
172.0
RHH5247_R3619
196.7
RHH5276_R3648
110.0
Naive B-cell nTPM: 108.6
Samples: 4
Max nTPM: 138.7
Min nTPM: 56.3
RHH5308_R3675
122.2
RHH5216_R3588
138.7
RHH5245_R3617
56.3
RHH5274_R3646
117.2
Non-switched memory B-cell nTPM: 162.0
Samples: 4
Max nTPM: 194.5
Min nTPM: 123.2
RHH5309_R3676
163.9
RHH5217_R3589
194.5
RHH5246_R3618
166.4
RHH5275_R3647
123.2
Plasmablast nTPM: 337.9
Samples: 4
Max nTPM: 393.1
Min nTPM: 296.0
RHH5312_R3679
296.0
RHH5220_R3592
362.9
RHH5249_R3621
393.1
RHH5278_R3650
299.5
Switched memory B-cell nTPM: 199.4
Samples: 4
Max nTPM: 239.6
Min nTPM: 151.1
RHH5311_R3678
217.6
RHH5219_R3591
239.6
RHH5248_R3620
189.3
RHH5277_R3649
151.1
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
40.8
Schmiedel sample id
TPM
Naive B-cell TPM: 40.8
Samples: 91
Max TPM: 60.6
Min TPM: 18.5
B_CELL_NAIVE_1
60.6
B_CELL_NAIVE_2
59.8
B_CELL_NAIVE_3
58.9
B_CELL_NAIVE_4
58.4
B_CELL_NAIVE_5
55.6
B_CELL_NAIVE_6
55.6
B_CELL_NAIVE_7
55.2
B_CELL_NAIVE_8
48.7
B_CELL_NAIVE_9
48.5
B_CELL_NAIVE_10
47.1
B_CELL_NAIVE_11
47.0
B_CELL_NAIVE_12
46.5
B_CELL_NAIVE_13
46.2
B_CELL_NAIVE_14
46.2
B_CELL_NAIVE_15
46.1
B_CELL_NAIVE_16
45.6
B_CELL_NAIVE_17
45.6
B_CELL_NAIVE_18
45.5
B_CELL_NAIVE_19
45.4
B_CELL_NAIVE_20
45.4
B_CELL_NAIVE_21
45.1
B_CELL_NAIVE_22
44.8
B_CELL_NAIVE_23
44.7
B_CELL_NAIVE_24
44.7
B_CELL_NAIVE_25
44.5
B_CELL_NAIVE_26
44.5
B_CELL_NAIVE_27
44.4
B_CELL_NAIVE_28
44.0
B_CELL_NAIVE_29
44.0
B_CELL_NAIVE_30
43.7
B_CELL_NAIVE_31
43.4
B_CELL_NAIVE_32
43.2
B_CELL_NAIVE_33
43.0
B_CELL_NAIVE_34
42.6
B_CELL_NAIVE_35
42.3
B_CELL_NAIVE_36
42.3
B_CELL_NAIVE_37
42.1
B_CELL_NAIVE_38
42.1
B_CELL_NAIVE_39
42.0
B_CELL_NAIVE_40
41.9
B_CELL_NAIVE_41
41.6
B_CELL_NAIVE_42
41.6
B_CELL_NAIVE_43
41.3
B_CELL_NAIVE_44
40.9
B_CELL_NAIVE_45
40.6
B_CELL_NAIVE_46
40.6
B_CELL_NAIVE_47
40.1
B_CELL_NAIVE_48
39.7
B_CELL_NAIVE_49
39.7
B_CELL_NAIVE_50
39.7
B_CELL_NAIVE_51
39.6
B_CELL_NAIVE_52
39.5
B_CELL_NAIVE_53
39.0
B_CELL_NAIVE_54
38.6
B_CELL_NAIVE_55
38.4
B_CELL_NAIVE_56
38.4
B_CELL_NAIVE_57
37.4
B_CELL_NAIVE_58
37.3
B_CELL_NAIVE_59
37.2
B_CELL_NAIVE_60
37.1
B_CELL_NAIVE_61
36.9
B_CELL_NAIVE_62
36.9
B_CELL_NAIVE_63
36.9
B_CELL_NAIVE_64
36.6
B_CELL_NAIVE_65
36.5
B_CELL_NAIVE_66
36.5
B_CELL_NAIVE_67
36.3
B_CELL_NAIVE_68
36.1
B_CELL_NAIVE_69
36.1
B_CELL_NAIVE_70
35.8
B_CELL_NAIVE_71
35.8
B_CELL_NAIVE_72
35.8
B_CELL_NAIVE_73
35.6
B_CELL_NAIVE_74
35.5
B_CELL_NAIVE_75
35.3
B_CELL_NAIVE_76
35.2
B_CELL_NAIVE_77
34.9
B_CELL_NAIVE_78
34.7
B_CELL_NAIVE_79
34.6
B_CELL_NAIVE_80
34.2
B_CELL_NAIVE_81
34.2
B_CELL_NAIVE_82
34.0
B_CELL_NAIVE_83
33.2
B_CELL_NAIVE_84
33.2
B_CELL_NAIVE_85
33.0
B_CELL_NAIVE_86
30.3
B_CELL_NAIVE_87
29.8
B_CELL_NAIVE_88
28.8
B_CELL_NAIVE_89
28.3
B_CELL_NAIVE_90
23.6
B_CELL_NAIVE_91
18.5
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The Human Protein Atlas project is funded
