A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
167.4
nTPM
Monaco:
286.9
nTPM
Schmiedel:
85.0
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
167.4
HPA sample
nTPM
Classical monocyte nTPM: 165.6
Samples: 6
Max nTPM: 229.2
Min nTPM: 133.7
P10809_1003
143.1
P10809_1020
202.9
P10809_1039
229.2
P10809_1058
133.7
P10809_1080
136.4
P10809_1107
148.5
Intermediate monocyte nTPM: 167.4
Samples: 6
Max nTPM: 203.5
Min nTPM: 148.3
P10809_1004
152.6
P10809_1023
203.5
P10809_1042
183.9
P10809_1061
154.4
P10809_1081
148.3
P10809_1108
161.5
Non-classical monocyte nTPM: 156.3
Samples: 5
Max nTPM: 198.0
Min nTPM: 135.3
P10809_1005
140.2
P10809_1053
198.0
P10809_1072
135.3
P10809_1082
139.5
P10809_1109
168.5
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
286.9
Monaco sample
nTPM
Classical monocyte nTPM: 286.9
Samples: 4
Max nTPM: 339.0
Min nTPM: 261.9
RHH5313_R3680
261.9
RHH5221_R3593
263.3
RHH5250_R3622
339.0
RHH5279_R3651
283.5
Intermediate monocyte nTPM: 265.0
Samples: 4
Max nTPM: 335.1
Min nTPM: 213.7
RHH5314_R3681
290.2
RHH5222_R3594
213.7
RHH5251_R3623
220.8
RHH5280_R3652
335.1
Non-classical monocyte nTPM: 240.2
Samples: 4
Max nTPM: 341.4
Min nTPM: 169.2
RHH5315_R3682
229.2
RHH5223_R3595
169.2
RHH5252_R3624
221.0
RHH5281_R3653
341.4
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
85.0
Schmiedel sample id
TPM
Classical monocyte TPM: 64.9
Samples: 91
Max TPM: 90.7
Min TPM: 38.6
MONOCYTES_1
90.7
MONOCYTES_2
87.3
MONOCYTES_3
86.0
MONOCYTES_4
85.8
MONOCYTES_5
85.6
MONOCYTES_6
85.0
MONOCYTES_7
82.1
MONOCYTES_8
81.3
MONOCYTES_9
77.5
MONOCYTES_10
76.3
MONOCYTES_11
76.3
MONOCYTES_12
76.3
MONOCYTES_13
76.1
MONOCYTES_14
75.8
MONOCYTES_15
75.6
MONOCYTES_16
75.5
MONOCYTES_17
74.9
MONOCYTES_18
74.7
MONOCYTES_19
74.6
MONOCYTES_20
73.2
MONOCYTES_21
73.0
MONOCYTES_22
73.0
MONOCYTES_23
72.6
MONOCYTES_24
72.5
MONOCYTES_25
72.4
MONOCYTES_26
72.3
MONOCYTES_27
71.6
MONOCYTES_28
71.5
MONOCYTES_29
71.2
MONOCYTES_30
71.1
MONOCYTES_31
70.9
MONOCYTES_32
70.1
MONOCYTES_33
70.0
MONOCYTES_34
69.4
MONOCYTES_35
69.0
MONOCYTES_36
69.0
MONOCYTES_37
68.8
MONOCYTES_38
68.2
MONOCYTES_39
67.7
MONOCYTES_40
67.2
MONOCYTES_41
67.1
MONOCYTES_42
66.1
MONOCYTES_43
65.7
MONOCYTES_44
65.3
MONOCYTES_45
64.9
MONOCYTES_46
64.3
MONOCYTES_47
64.3
MONOCYTES_48
64.2
MONOCYTES_49
64.0
MONOCYTES_50
63.9
MONOCYTES_51
62.7
MONOCYTES_52
62.6
MONOCYTES_53
61.9
MONOCYTES_54
61.4
MONOCYTES_55
60.5
MONOCYTES_56
60.3
MONOCYTES_57
59.9
MONOCYTES_58
59.8
MONOCYTES_59
59.6
MONOCYTES_60
59.5
MONOCYTES_61
59.5
MONOCYTES_62
59.3
MONOCYTES_63
59.2
MONOCYTES_64
58.8
MONOCYTES_65
58.4
MONOCYTES_66
57.9
MONOCYTES_67
57.3
MONOCYTES_68
56.9
MONOCYTES_69
56.7
MONOCYTES_70
56.2
MONOCYTES_71
56.0
MONOCYTES_72
55.7
MONOCYTES_73
54.9
MONOCYTES_74
54.1
MONOCYTES_75
53.9
MONOCYTES_76
53.9
MONOCYTES_77
53.1
MONOCYTES_78
53.0
MONOCYTES_79
52.8
MONOCYTES_80
52.5
MONOCYTES_81
51.6
MONOCYTES_82
51.5
MONOCYTES_83
50.0
MONOCYTES_84
50.0
MONOCYTES_85
49.8
MONOCYTES_86
49.5
MONOCYTES_87
48.1
MONOCYTES_88
48.1
MONOCYTES_89
47.5
MONOCYTES_90
44.6
MONOCYTES_91
38.6
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Non-classical monocyte TPM: 85.0
Samples: 90
Max TPM: 124.9
Min TPM: 56.8
M2_1
124.9
M2_2
115.1
M2_3
114.0
M2_4
114.0
M2_5
112.9
M2_6
108.2
M2_7
108.0
M2_8
107.4
M2_9
106.5
M2_10
101.5
M2_11
100.6
M2_12
100.4
M2_13
99.9
M2_14
99.7
M2_15
99.4
M2_16
99.1
M2_17
97.5
M2_18
94.2
M2_19
94.1
M2_20
93.3
M2_21
93.2
M2_22
93.0
M2_23
92.6
M2_24
91.4
M2_25
90.8
M2_26
90.7
M2_27
90.5
M2_28
89.4
M2_29
88.6
M2_30
88.3
M2_31
88.1
M2_32
88.0
M2_33
87.5
M2_34
87.0
M2_35
86.8
M2_36
86.2
M2_37
86.0
M2_38
85.9
M2_39
85.9
M2_40
85.8
M2_41
84.8
M2_42
84.5
M2_43
84.4
M2_44
83.9
M2_45
83.9
M2_46
82.7
M2_47
82.2
M2_48
82.0
M2_49
81.7
M2_50
81.4
M2_51
81.2
M2_52
81.0
M2_53
80.8
M2_54
80.1
M2_55
80.1
M2_56
79.6
M2_57
79.3
M2_58
78.9
M2_59
78.8
M2_60
78.5
M2_61
78.4
M2_62
78.0
M2_63
77.6
M2_64
76.1
M2_65
76.1
M2_66
76.0
M2_67
75.8
M2_68
75.3
M2_69
74.7
M2_70
74.4
M2_71
74.1
M2_72
73.8
M2_73
73.2
M2_74
73.2
M2_75
72.6
M2_76
72.6
M2_77
72.3
M2_78
71.9
M2_79
71.3
M2_80
71.2
M2_81
70.7
M2_82
70.6
M2_83
69.5
M2_84
68.8
M2_85
67.3
M2_86
67.0
M2_87
65.1
M2_88
64.2
M2_89
63.0
M2_90
56.8
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