A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
13.1
nTPM
Monaco:
76.8
nTPM
Schmiedel:
55.7
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
13.1
HPA sample
nTPM
NK-cell nTPM: 13.1
Samples: 6
Max nTPM: 18.0
Min nTPM: 8.9
P10809_1013
15.0
P10809_1033
8.9
P10809_1052
10.1
P10809_1071
15.3
P10809_1093
18.0
P10809_1103
11.2
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
76.8
Monaco sample
nTPM
NK-cell nTPM: 76.8
Samples: 4
Max nTPM: 106.9
Min nTPM: 58.8
RHH5316_R3683
77.2
RHH5224_R3596
58.8
RHH5253_R3625
106.9
RHH5282_R3654
64.4
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
55.7
Schmiedel sample id
TPM
NK-cell TPM: 55.7
Samples: 90
Max TPM: 93.5
Min TPM: 36.4
NK_1
93.5
NK_2
86.2
NK_3
83.9
NK_4
80.2
NK_5
77.6
NK_6
76.1
NK_7
71.9
NK_8
71.4
NK_9
69.4
NK_10
66.7
NK_11
66.6
NK_12
66.4
NK_13
66.1
NK_14
65.5
NK_15
64.8
NK_16
64.7
NK_17
64.4
NK_18
63.6
NK_19
63.4
NK_20
62.9
NK_21
61.7
NK_22
61.2
NK_23
60.9
NK_24
59.8
NK_25
59.4
NK_26
59.0
NK_27
58.9
NK_28
58.6
NK_29
58.5
NK_30
58.1
NK_31
57.9
NK_32
57.4
NK_33
57.2
NK_34
56.8
NK_35
56.8
NK_36
56.4
NK_37
56.2
NK_38
56.2
NK_39
55.9
NK_40
55.7
NK_41
55.6
NK_42
55.4
NK_43
55.0
NK_44
55.0
NK_45
54.5
NK_46
54.2
NK_47
54.0
NK_48
54.0
NK_49
54.0
NK_50
54.0
NK_51
52.9
NK_52
52.8
NK_53
52.4
NK_54
52.2
NK_55
52.1
NK_56
51.9
NK_57
51.8
NK_58
51.8
NK_59
50.4
NK_60
50.3
NK_61
50.3
NK_62
49.4
NK_63
48.9
NK_64
48.8
NK_65
48.0
NK_66
47.9
NK_67
47.7
NK_68
47.5
NK_69
47.1
NK_70
47.0
NK_71
47.0
NK_72
46.7
NK_73
46.2
NK_74
46.2
NK_75
46.2
NK_76
46.0
NK_77
45.7
NK_78
45.7
NK_79
45.5
NK_80
45.2
NK_81
45.2
NK_82
44.6
NK_83
43.6
NK_84
42.4
NK_85
42.2
NK_86
42.0
NK_87
41.7
NK_88
41.4
NK_89
37.5
NK_90
36.4
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