A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
9.9
nTPM
Monaco:
51.8
nTPM
Schmiedel:
35.7
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
9.9
HPA sample
nTPM
Classical monocyte nTPM: 7.2
Samples: 6
Max nTPM: 10.1
Min nTPM: 5.3
P10809_1003
7.1
P10809_1020
6.6
P10809_1039
6.8
P10809_1058
10.1
P10809_1080
7.1
P10809_1107
5.3
Intermediate monocyte nTPM: 4.6
Samples: 6
Max nTPM: 9.9
Min nTPM: 1.4
P10809_1004
5.8
P10809_1023
2.1
P10809_1042
3.8
P10809_1061
1.4
P10809_1081
9.9
P10809_1108
4.3
Non-classical monocyte nTPM: 9.9
Samples: 5
Max nTPM: 20.8
Min nTPM: 5.4
P10809_1005
5.9
P10809_1053
9.1
P10809_1072
20.8
P10809_1082
8.3
P10809_1109
5.4
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
51.8
Monaco sample
nTPM
Classical monocyte nTPM: 49.2
Samples: 4
Max nTPM: 59.6
Min nTPM: 41.2
RHH5313_R3680
46.3
RHH5221_R3593
49.5
RHH5250_R3622
59.6
RHH5279_R3651
41.2
Intermediate monocyte nTPM: 45.9
Samples: 4
Max nTPM: 56.3
Min nTPM: 32.4
RHH5314_R3681
46.0
RHH5222_R3594
32.4
RHH5251_R3623
48.8
RHH5280_R3652
56.3
Non-classical monocyte nTPM: 51.8
Samples: 4
Max nTPM: 59.7
Min nTPM: 45.5
RHH5315_R3682
45.6
RHH5223_R3595
45.5
RHH5252_R3624
56.4
RHH5281_R3653
59.7
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
35.7
Schmiedel sample id
TPM
Classical monocyte TPM: 26.7
Samples: 91
Max TPM: 35.2
Min TPM: 17.3
MONOCYTES_1
35.2
MONOCYTES_2
35.0
MONOCYTES_3
34.7
MONOCYTES_4
34.5
MONOCYTES_5
33.5
MONOCYTES_6
32.6
MONOCYTES_7
32.2
MONOCYTES_8
32.0
MONOCYTES_9
31.9
MONOCYTES_10
31.3
MONOCYTES_11
30.3
MONOCYTES_12
30.2
MONOCYTES_13
30.0
MONOCYTES_14
29.9
MONOCYTES_15
29.8
MONOCYTES_16
29.8
MONOCYTES_17
29.7
MONOCYTES_18
29.6
MONOCYTES_19
29.4
MONOCYTES_20
29.4
MONOCYTES_21
29.3
MONOCYTES_22
28.9
MONOCYTES_23
28.7
MONOCYTES_24
28.7
MONOCYTES_25
28.4
MONOCYTES_26
28.2
MONOCYTES_27
28.1
MONOCYTES_28
27.9
MONOCYTES_29
27.8
MONOCYTES_30
27.8
MONOCYTES_31
27.7
MONOCYTES_32
27.6
MONOCYTES_33
27.5
MONOCYTES_34
27.4
MONOCYTES_35
27.4
MONOCYTES_36
27.4
MONOCYTES_37
27.4
MONOCYTES_38
27.3
MONOCYTES_39
27.1
MONOCYTES_40
27.1
MONOCYTES_41
27.0
MONOCYTES_42
27.0
MONOCYTES_43
27.0
MONOCYTES_44
26.9
MONOCYTES_45
26.7
MONOCYTES_46
26.6
MONOCYTES_47
26.5
MONOCYTES_48
26.4
MONOCYTES_49
26.4
MONOCYTES_50
26.3
MONOCYTES_51
26.2
MONOCYTES_52
26.1
MONOCYTES_53
25.9
MONOCYTES_54
25.9
MONOCYTES_55
25.8
MONOCYTES_56
25.7
MONOCYTES_57
25.6
MONOCYTES_58
25.6
MONOCYTES_59
25.5
MONOCYTES_60
25.4
MONOCYTES_61
25.3
MONOCYTES_62
25.2
MONOCYTES_63
25.2
MONOCYTES_64
25.0
MONOCYTES_65
25.0
MONOCYTES_66
24.4
MONOCYTES_67
24.4
MONOCYTES_68
24.4
MONOCYTES_69
24.3
MONOCYTES_70
24.2
MONOCYTES_71
24.0
MONOCYTES_72
24.0
MONOCYTES_73
23.9
MONOCYTES_74
23.7
MONOCYTES_75
23.6
MONOCYTES_76
23.6
MONOCYTES_77
23.1
MONOCYTES_78
23.0
MONOCYTES_79
23.0
MONOCYTES_80
22.9
MONOCYTES_81
22.8
MONOCYTES_82
22.6
MONOCYTES_83
22.4
MONOCYTES_84
22.2
MONOCYTES_85
21.8
MONOCYTES_86
21.5
MONOCYTES_87
21.4
MONOCYTES_88
21.0
MONOCYTES_89
20.9
MONOCYTES_90
20.7
MONOCYTES_91
17.3
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Non-classical monocyte TPM: 35.7
Samples: 90
Max TPM: 56.9
Min TPM: 24.1
M2_1
56.9
M2_2
55.5
M2_3
53.3
M2_4
52.5
M2_5
50.8
M2_6
49.9
M2_7
49.2
M2_8
48.2
M2_9
46.5
M2_10
46.0
M2_11
45.8
M2_12
45.4
M2_13
44.5
M2_14
44.3
M2_15
43.6
M2_16
42.9
M2_17
42.8
M2_18
41.5
M2_19
40.8
M2_20
40.7
M2_21
40.6
M2_22
39.7
M2_23
38.6
M2_24
38.2
M2_25
38.2
M2_26
37.3
M2_27
37.2
M2_28
37.2
M2_29
36.3
M2_30
36.3
M2_31
36.1
M2_32
35.9
M2_33
35.7
M2_34
35.7
M2_35
35.5
M2_36
35.2
M2_37
35.2
M2_38
35.2
M2_39
35.1
M2_40
35.1
M2_41
35.1
M2_42
35.0
M2_43
35.0
M2_44
34.9
M2_45
34.7
M2_46
34.6
M2_47
34.5
M2_48
34.3
M2_49
33.8
M2_50
33.6
M2_51
33.1
M2_52
32.9
M2_53
32.7
M2_54
32.6
M2_55
32.5
M2_56
32.2
M2_57
31.9
M2_58
31.9
M2_59
31.8
M2_60
31.5
M2_61
31.4
M2_62
31.3
M2_63
31.1
M2_64
30.9
M2_65
30.8
M2_66
30.8
M2_67
30.8
M2_68
30.7
M2_69
30.7
M2_70
30.6
M2_71
29.9
M2_72
29.7
M2_73
29.7
M2_74
29.6
M2_75
29.6
M2_76
29.6
M2_77
29.3
M2_78
29.2
M2_79
29.1
M2_80
28.7
M2_81
28.5
M2_82
28.2
M2_83
27.6
M2_84
27.1
M2_85
26.4
M2_86
26.2
M2_87
25.6
M2_88
25.1
M2_89
25.1
M2_90
24.1
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