A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2.7
nTPM
Monaco:
15.4
nTPM
Schmiedel:
41.7
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2.7
HPA sample
nTPM
Memory B-cell nTPM: 2.7
Samples: 6
Max nTPM: 4.3
Min nTPM: 1.4
P10809_1017
2.3
P10809_1025
2.0
P10809_1044
4.3
P10809_1063
3.6
P10809_1092
1.4
P10809_1105
2.3
Naive B-cell nTPM: 2.7
Samples: 6
Max nTPM: 3.6
Min nTPM: 1.3
P10809_1011
3.6
P10809_1029
3.5
P10809_1048
3.0
P10809_1067
2.5
P10809_1091
1.3
P10809_1104
2.1
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
15.4
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 13.0
Samples: 4
Max nTPM: 17.6
Min nTPM: 8.2
RHH5310_R3677
10.6
RHH5218_R3590
15.7
RHH5247_R3619
8.2
RHH5276_R3648
17.6
Naive B-cell nTPM: 15.5
Samples: 4
Max nTPM: 19.4
Min nTPM: 8.5
RHH5308_R3675
14.9
RHH5216_R3588
8.5
RHH5245_R3617
19.0
RHH5274_R3646
19.4
Non-switched memory B-cell nTPM: 12.7
Samples: 4
Max nTPM: 15.6
Min nTPM: 8.7
RHH5309_R3676
15.6
RHH5217_R3589
12.5
RHH5246_R3618
8.7
RHH5275_R3647
14.1
Plasmablast nTPM: 8.3
Samples: 4
Max nTPM: 12.0
Min nTPM: 5.3
RHH5312_R3679
9.7
RHH5220_R3592
12.0
RHH5249_R3621
6.1
RHH5278_R3650
5.3
Switched memory B-cell nTPM: 14.5
Samples: 4
Max nTPM: 20.2
Min nTPM: 9.4
RHH5311_R3678
17.0
RHH5219_R3591
11.5
RHH5248_R3620
9.4
RHH5277_R3649
20.2
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
41.7
Schmiedel sample id
TPM
Naive B-cell TPM: 41.7
Samples: 91
Max TPM: 53.9
Min TPM: 29.7
B_CELL_NAIVE_1
53.9
B_CELL_NAIVE_2
53.9
B_CELL_NAIVE_3
50.5
B_CELL_NAIVE_4
50.4
B_CELL_NAIVE_5
50.1
B_CELL_NAIVE_6
49.0
B_CELL_NAIVE_7
48.9
B_CELL_NAIVE_8
48.7
B_CELL_NAIVE_9
48.7
B_CELL_NAIVE_10
48.4
B_CELL_NAIVE_11
48.0
B_CELL_NAIVE_12
46.5
B_CELL_NAIVE_13
46.1
B_CELL_NAIVE_14
45.7
B_CELL_NAIVE_15
45.7
B_CELL_NAIVE_16
45.3
B_CELL_NAIVE_17
45.3
B_CELL_NAIVE_18
45.3
B_CELL_NAIVE_19
45.1
B_CELL_NAIVE_20
44.9
B_CELL_NAIVE_21
44.9
B_CELL_NAIVE_22
44.9
B_CELL_NAIVE_23
44.8
B_CELL_NAIVE_24
44.8
B_CELL_NAIVE_25
44.6
B_CELL_NAIVE_26
44.2
B_CELL_NAIVE_27
44.0
B_CELL_NAIVE_28
43.8
B_CELL_NAIVE_29
43.7
B_CELL_NAIVE_30
43.6
B_CELL_NAIVE_31
43.6
B_CELL_NAIVE_32
43.6
B_CELL_NAIVE_33
43.2
B_CELL_NAIVE_34
43.2
B_CELL_NAIVE_35
43.1
B_CELL_NAIVE_36
42.9
B_CELL_NAIVE_37
42.8
B_CELL_NAIVE_38
42.8
B_CELL_NAIVE_39
42.6
B_CELL_NAIVE_40
42.5
B_CELL_NAIVE_41
42.4
B_CELL_NAIVE_42
42.4
B_CELL_NAIVE_43
42.4
B_CELL_NAIVE_44
42.3
B_CELL_NAIVE_45
42.2
B_CELL_NAIVE_46
42.0
B_CELL_NAIVE_47
41.9
B_CELL_NAIVE_48
41.9
B_CELL_NAIVE_49
41.8
B_CELL_NAIVE_50
41.7
B_CELL_NAIVE_51
41.6
B_CELL_NAIVE_52
41.5
B_CELL_NAIVE_53
41.5
B_CELL_NAIVE_54
41.3
B_CELL_NAIVE_55
41.1
B_CELL_NAIVE_56
41.1
B_CELL_NAIVE_57
41.0
B_CELL_NAIVE_58
40.6
B_CELL_NAIVE_59
40.5
B_CELL_NAIVE_60
40.3
B_CELL_NAIVE_61
40.2
B_CELL_NAIVE_62
39.9
B_CELL_NAIVE_63
39.9
B_CELL_NAIVE_64
39.8
B_CELL_NAIVE_65
39.7
B_CELL_NAIVE_66
39.6
B_CELL_NAIVE_67
39.0
B_CELL_NAIVE_68
39.0
B_CELL_NAIVE_69
38.5
B_CELL_NAIVE_70
38.3
B_CELL_NAIVE_71
38.2
B_CELL_NAIVE_72
38.2
B_CELL_NAIVE_73
37.8
B_CELL_NAIVE_74
37.5
B_CELL_NAIVE_75
37.1
B_CELL_NAIVE_76
36.8
B_CELL_NAIVE_77
36.6
B_CELL_NAIVE_78
36.3
B_CELL_NAIVE_79
36.0
B_CELL_NAIVE_80
35.0
B_CELL_NAIVE_81
34.9
B_CELL_NAIVE_82
34.8
B_CELL_NAIVE_83
34.0
B_CELL_NAIVE_84
33.9
B_CELL_NAIVE_85
33.6
B_CELL_NAIVE_86
33.6
B_CELL_NAIVE_87
33.4
B_CELL_NAIVE_88
33.3
B_CELL_NAIVE_89
32.3
B_CELL_NAIVE_90
31.6
B_CELL_NAIVE_91
29.7
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