A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1.1
nTPM
Monaco:
13.6
nTPM
Schmiedel:
25.9
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1.1
HPA sample
nTPM
Classical monocyte nTPM: 1.1
Samples: 6
Max nTPM: 1.7
Min nTPM: 0.7
P10809_1003
0.9
P10809_1020
1.2
P10809_1039
0.7
P10809_1058
1.7
P10809_1080
1.0
P10809_1107
1.2
Intermediate monocyte nTPM: 1.0
Samples: 6
Max nTPM: 2.8
Min nTPM: 0.1
P10809_1004
0.9
P10809_1023
0.2
P10809_1042
2.8
P10809_1061
0.1
P10809_1081
1.3
P10809_1108
0.7
Non-classical monocyte nTPM: 0.7
Samples: 5
Max nTPM: 1.4
Min nTPM: 0.2
P10809_1005
0.4
P10809_1053
0.8
P10809_1072
0.2
P10809_1082
1.4
P10809_1109
0.6
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
13.6
Monaco sample
nTPM
Classical monocyte nTPM: 8.6
Samples: 4
Max nTPM: 10.3
Min nTPM: 6.1
RHH5313_R3680
9.5
RHH5221_R3593
10.3
RHH5250_R3622
8.4
RHH5279_R3651
6.1
Intermediate monocyte nTPM: 9.7
Samples: 4
Max nTPM: 17.2
Min nTPM: 6.5
RHH5314_R3681
8.1
RHH5222_R3594
6.9
RHH5251_R3623
17.2
RHH5280_R3652
6.5
Non-classical monocyte nTPM: 13.6
Samples: 4
Max nTPM: 19.8
Min nTPM: 10.2
RHH5315_R3682
11.1
RHH5223_R3595
19.8
RHH5252_R3624
10.2
RHH5281_R3653
13.2
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
25.9
Schmiedel sample id
TPM
Classical monocyte TPM: 15.2
Samples: 91
Max TPM: 18.2
Min TPM: 11.5
MONOCYTES_1
18.2
MONOCYTES_2
18.0
MONOCYTES_3
18.0
MONOCYTES_4
17.9
MONOCYTES_5
17.9
MONOCYTES_6
17.8
MONOCYTES_7
17.8
MONOCYTES_8
17.6
MONOCYTES_9
17.3
MONOCYTES_10
17.2
MONOCYTES_11
17.1
MONOCYTES_12
17.1
MONOCYTES_13
16.8
MONOCYTES_14
16.7
MONOCYTES_15
16.7
MONOCYTES_16
16.7
MONOCYTES_17
16.5
MONOCYTES_18
16.5
MONOCYTES_19
16.4
MONOCYTES_20
16.4
MONOCYTES_21
16.4
MONOCYTES_22
16.3
MONOCYTES_23
16.2
MONOCYTES_24
16.2
MONOCYTES_25
16.2
MONOCYTES_26
16.2
MONOCYTES_27
16.2
MONOCYTES_28
16.2
MONOCYTES_29
16.1
MONOCYTES_30
16.1
MONOCYTES_31
16.0
MONOCYTES_32
15.9
MONOCYTES_33
15.9
MONOCYTES_34
15.8
MONOCYTES_35
15.7
MONOCYTES_36
15.6
MONOCYTES_37
15.5
MONOCYTES_38
15.5
MONOCYTES_39
15.4
MONOCYTES_40
15.4
MONOCYTES_41
15.4
MONOCYTES_42
15.3
MONOCYTES_43
15.3
MONOCYTES_44
15.3
MONOCYTES_45
15.3
MONOCYTES_46
15.2
MONOCYTES_47
15.1
MONOCYTES_48
15.0
MONOCYTES_49
15.0
MONOCYTES_50
14.9
MONOCYTES_51
14.9
MONOCYTES_52
14.9
MONOCYTES_53
14.8
MONOCYTES_54
14.8
MONOCYTES_55
14.7
MONOCYTES_56
14.7
MONOCYTES_57
14.7
MONOCYTES_58
14.5
MONOCYTES_59
14.5
MONOCYTES_60
14.5
MONOCYTES_61
14.4
MONOCYTES_62
14.4
MONOCYTES_63
14.4
MONOCYTES_64
14.4
MONOCYTES_65
14.3
MONOCYTES_66
14.3
MONOCYTES_67
14.3
MONOCYTES_68
14.3
MONOCYTES_69
14.2
MONOCYTES_70
14.2
MONOCYTES_71
14.2
MONOCYTES_72
14.1
MONOCYTES_73
14.1
MONOCYTES_74
14.1
MONOCYTES_75
13.9
MONOCYTES_76
13.9
MONOCYTES_77
13.8
MONOCYTES_78
13.7
MONOCYTES_79
13.6
MONOCYTES_80
13.5
MONOCYTES_81
13.5
MONOCYTES_82
13.4
MONOCYTES_83
13.4
MONOCYTES_84
13.1
MONOCYTES_85
13.0
MONOCYTES_86
12.8
MONOCYTES_87
12.2
MONOCYTES_88
11.9
MONOCYTES_89
11.9
MONOCYTES_90
11.7
MONOCYTES_91
11.5
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Non-classical monocyte TPM: 25.9
Samples: 90
Max TPM: 32.6
Min TPM: 21.1
M2_1
32.6
M2_2
31.9
M2_3
29.8
M2_4
29.8
M2_5
29.7
M2_6
29.6
M2_7
29.4
M2_8
29.1
M2_9
29.1
M2_10
28.9
M2_11
28.7
M2_12
28.7
M2_13
28.5
M2_14
28.5
M2_15
28.4
M2_16
28.3
M2_17
28.3
M2_18
28.3
M2_19
28.2
M2_20
27.8
M2_21
27.6
M2_22
27.6
M2_23
27.5
M2_24
27.5
M2_25
27.4
M2_26
27.3
M2_27
27.2
M2_28
27.2
M2_29
27.1
M2_30
27.1
M2_31
27.1
M2_32
27.0
M2_33
27.0
M2_34
26.9
M2_35
26.9
M2_36
26.7
M2_37
26.5
M2_38
26.5
M2_39
26.5
M2_40
26.3
M2_41
26.2
M2_42
26.2
M2_43
26.1
M2_44
25.9
M2_45
25.9
M2_46
25.9
M2_47
25.8
M2_48
25.7
M2_49
25.4
M2_50
25.3
M2_51
25.2
M2_52
25.2
M2_53
25.2
M2_54
25.1
M2_55
25.1
M2_56
25.0
M2_57
25.0
M2_58
24.9
M2_59
24.9
M2_60
24.8
M2_61
24.8
M2_62
24.7
M2_63
24.7
M2_64
24.6
M2_65
24.4
M2_66
24.4
M2_67
24.1
M2_68
24.1
M2_69
24.0
M2_70
23.9
M2_71
23.9
M2_72
23.6
M2_73
23.5
M2_74
23.4
M2_75
23.4
M2_76
23.3
M2_77
23.2
M2_78
23.0
M2_79
22.9
M2_80
22.9
M2_81
22.8
M2_82
22.8
M2_83
22.6
M2_84
22.6
M2_85
22.5
M2_86
22.2
M2_87
21.9
M2_88
21.8
M2_89
21.1
M2_90
21.1
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