MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:1.9 nTPM
HPA Brain:12.2 nTPM
GTEx:1.9 nTPM
FANTOM5:3.6 Scaled Tags Per Million
Pig:6.9 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 12.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 9.9
1833 Male, age 53, unknown 12.8
1830 Male, age 51, unknown 12.5
2411 Female, age 72, unknown 12.2
1827 Male, age 72, unknown 11.2
2019 Male, age 18, unknown 9.9
2219 Male, age 76, both hemispheres 9.5
1870 Female, age 42, unknown 8.6
2666 Male, age 74, left hemisphere 8.5
2828 Female, age 72, unknown 7.0
2586 Male, age 75, left hemisphere 6.9
Dorsal raphe nucleus
nTPM: 8.0
2750 Male, age 76, both hemispheres 10.2
2016 Female, age 72, unknown 9.9
2298 Female, age 72, unknown 8.7
1828 Male, age 53, unknown 7.6
2047 Male, age 72, unknown 3.7
Inferior colliculus
nTPM: 9.0
2849 Male, age 72, unknown 10.0
2097 Female, age 72, unknown 9.3
1848 Female, age 42, unknown 9.1
1890 Male, age 53, unknown 7.6
Median raphe nucleus
nTPM: 5.2
2220 Male, age 76, midline 5.2
Periaquaductal grey, anterior
nTPM: 8.3
2502 Female, age 75, unknown 9.5
1947 Male, age 18, unknown 7.7
1795 Male, age 51, unknown 7.6
Periaquaductal grey, dorsal
nTPM: 8.0
2464 Female, age 72, unknown 10.2
1831 Male, age 72, unknown 7.8
1840 Male, age 53, unknown 7.5
2850 Male, age 76, both hemispheres 6.5
Periaquaductal grey, lateral
nTPM: 8.2
2272 Male, age 74, both hemispheres 10.7
2053 Male, age 18, unknown 9.1
2140 Male, age 76, both hemispheres 4.8
Pretectal area
nTPM: 8.7
2316 Male, age 76, right hemisphere 12.0
2825 Male, age 18, unknown 11.6
1815 Male, age 53, unknown 10.3
1817 Female, age 42, unknown 9.3
2407 Male, age 75, both hemispheres 9.0
2007 Male, age 72, unknown 8.8
2224 Female, age 72, unknown 8.7
2273 Male, age 74, both hemispheres 8.3
1816 Male, age 51, unknown 6.4
1944 Female, age 72, unknown 6.2
2667 Female, age 75, unknown 5.4
Red nucleus
nTPM: 12.2
1821 Female, age 72, unknown 16.9
2823 Male, age 76, right hemisphere 14.9
1904 Male, age 53, unknown 14.1
2503 Female, age 72, unknown 13.9
1865 Male, age 51, unknown 13.6
2769 Male, age 72, unknown 13.4
1954 Female, age 42, unknown 12.9
2785 Male, age 18, unknown 10.5
2725 Female, age 75, unknown 9.6
2227 Male, age 72, unknown 9.3
2588 Male, age 74, left hemisphere 9.0
2584 Male, age 75, left hemisphere 8.7
Substantia nigra
nTPM: 7.9
2409 Female, age 72, unknown 13.5
2590 Female, age 75, unknown 11.6
2241 Male, age 72, unknown 8.6
1851 Male, age 51, unknown 8.0
2583 Male, age 75, right hemisphere 7.6
1889 Female, age 72, unknown 7.5
1941 Male, age 53, unknown 6.3
2699 Male, age 18, unknown 6.2
1916 Female, age 42, unknown 5.1
2665 Male, age 74, both hemispheres 4.6
Superior colliculus
nTPM: 10.4
1995 Male, age 72, unknown 15.2
1895 Male, age 76, right hemisphere 13.8
1913 Female, age 42, unknown 12.6
1839 Male, age 51, unknown 11.3
2668 Female, age 75, unknown 11.0
2587 Male, age 74, left hemisphere 9.8
2261 Male, age 18, unknown 9.1
1796 Male, age 53, unknown 8.1
2087 Female, age 72, unknown 6.9
2664 Male, age 75, both hemispheres 6.5
Ventral tegmental area
nTPM: 8.1
2410 Female, age 72, unknown 11.2
1915 Female, age 42, unknown 8.0
2218 Male, age 76, both hemispheres 7.9
2021 Male, age 53, unknown 7.8
2223 Female, age 72, unknown 7.3
1942 Male, age 51, unknown 6.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 1.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1.9
Samples: 183

Max nTPM: 7.4
Min nTPM: 0.0
Std nTPM: 1.4
Median nTPM: 1.6
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 7.4
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 6.9
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 6.7
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 6.6
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 6.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 6.5
GTEX-1RQEC-0011-R2b-SM-EY5ZT 60-69 years, male 4.7
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 4.6
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 4.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 4.2
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 4.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 3.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 3.6
FF:10158-103A5 76 years, female 3.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 6.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 0.2
Samples: 4

Max nTPM: 0.7
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.7
Sample C Male 0.0
Sample D Male 0.0
Midbrain
nTPM: 0.1
Samples: 4

Max nTPM: 0.1
Min nTPM: 0.0
Sample A Female 0.1
Sample B Female 0.1
Sample C Male 0.0
Sample D Male 0.0
Periaqueductal gray
nTPM: 0.0
Samples: 3

Max nTPM: 0.0
Min nTPM: 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0
Superior colliculi
nTPM: 6.9
Samples: 4

Max nTPM: 26.7
Min nTPM: 0.0
Sample A Female 0.9
Sample B Female 26.7
Sample C Male 0.0
Sample D Male 0.1

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