A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
122.1
nTPM
Monaco:
362.1
nTPM
Schmiedel:
139.7
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
122.1
HPA sample
nTPM
Memory B-cell nTPM: 121.6
Samples: 6
Max nTPM: 155.3
Min nTPM: 81.0
P10809_1017
124.4
P10809_1025
155.3
P10809_1044
81.0
P10809_1063
118.2
P10809_1092
134.9
P10809_1105
115.5
Naive B-cell nTPM: 122.1
Samples: 6
Max nTPM: 180.4
Min nTPM: 93.2
P10809_1011
93.2
P10809_1029
120.7
P10809_1048
180.4
P10809_1067
96.0
P10809_1091
122.8
P10809_1104
119.3
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
362.1
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 263.9
Samples: 4
Max nTPM: 267.1
Min nTPM: 260.4
RHH5310_R3677
266.7
RHH5218_R3590
267.1
RHH5247_R3619
261.4
RHH5276_R3648
260.4
Naive B-cell nTPM: 269.9
Samples: 4
Max nTPM: 338.0
Min nTPM: 215.4
RHH5308_R3675
215.4
RHH5216_R3588
338.0
RHH5245_R3617
281.9
RHH5274_R3646
244.2
Non-switched memory B-cell nTPM: 255.5
Samples: 4
Max nTPM: 302.9
Min nTPM: 226.3
RHH5309_R3676
238.9
RHH5217_R3589
302.9
RHH5246_R3618
253.7
RHH5275_R3647
226.3
Plasmablast nTPM: 362.1
Samples: 4
Max nTPM: 409.2
Min nTPM: 338.7
RHH5312_R3679
338.7
RHH5220_R3592
409.2
RHH5249_R3621
344.6
RHH5278_R3650
356.0
Switched memory B-cell nTPM: 249.5
Samples: 4
Max nTPM: 259.9
Min nTPM: 238.4
RHH5311_R3678
259.0
RHH5219_R3591
240.6
RHH5248_R3620
238.4
RHH5277_R3649
259.9
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
139.7
Schmiedel sample id
TPM
Naive B-cell TPM: 139.7
Samples: 91
Max TPM: 197.2
Min TPM: 101.3
B_CELL_NAIVE_1
197.2
B_CELL_NAIVE_2
190.0
B_CELL_NAIVE_3
185.3
B_CELL_NAIVE_4
184.1
B_CELL_NAIVE_5
176.6
B_CELL_NAIVE_6
173.9
B_CELL_NAIVE_7
173.2
B_CELL_NAIVE_8
171.2
B_CELL_NAIVE_9
168.1
B_CELL_NAIVE_10
165.0
B_CELL_NAIVE_11
164.7
B_CELL_NAIVE_12
164.1
B_CELL_NAIVE_13
160.6
B_CELL_NAIVE_14
159.3
B_CELL_NAIVE_15
158.6
B_CELL_NAIVE_16
158.3
B_CELL_NAIVE_17
157.2
B_CELL_NAIVE_18
155.9
B_CELL_NAIVE_19
155.6
B_CELL_NAIVE_20
154.9
B_CELL_NAIVE_21
151.6
B_CELL_NAIVE_22
151.4
B_CELL_NAIVE_23
150.1
B_CELL_NAIVE_24
147.4
B_CELL_NAIVE_25
147.3
B_CELL_NAIVE_26
147.3
B_CELL_NAIVE_27
147.3
B_CELL_NAIVE_28
147.2
B_CELL_NAIVE_29
145.4
B_CELL_NAIVE_30
145.0
B_CELL_NAIVE_31
144.3
B_CELL_NAIVE_32
142.9
B_CELL_NAIVE_33
142.6
B_CELL_NAIVE_34
142.3
B_CELL_NAIVE_35
142.1
B_CELL_NAIVE_36
141.5
B_CELL_NAIVE_37
140.8
B_CELL_NAIVE_38
140.6
B_CELL_NAIVE_39
140.1
B_CELL_NAIVE_40
140.0
B_CELL_NAIVE_41
139.9
B_CELL_NAIVE_42
139.9
B_CELL_NAIVE_43
139.6
B_CELL_NAIVE_44
138.9
B_CELL_NAIVE_45
138.8
B_CELL_NAIVE_46
138.7
B_CELL_NAIVE_47
138.7
B_CELL_NAIVE_48
138.0
B_CELL_NAIVE_49
137.1
B_CELL_NAIVE_50
136.7
B_CELL_NAIVE_51
136.1
B_CELL_NAIVE_52
135.1
B_CELL_NAIVE_53
135.0
B_CELL_NAIVE_54
134.9
B_CELL_NAIVE_55
133.6
B_CELL_NAIVE_56
133.4
B_CELL_NAIVE_57
133.4
B_CELL_NAIVE_58
133.4
B_CELL_NAIVE_59
132.3
B_CELL_NAIVE_60
131.6
B_CELL_NAIVE_61
131.6
B_CELL_NAIVE_62
131.5
B_CELL_NAIVE_63
131.0
B_CELL_NAIVE_64
130.2
B_CELL_NAIVE_65
130.2
B_CELL_NAIVE_66
130.1
B_CELL_NAIVE_67
129.0
B_CELL_NAIVE_68
127.5
B_CELL_NAIVE_69
127.1
B_CELL_NAIVE_70
126.1
B_CELL_NAIVE_71
125.4
B_CELL_NAIVE_72
123.3
B_CELL_NAIVE_73
122.5
B_CELL_NAIVE_74
121.3
B_CELL_NAIVE_75
120.4
B_CELL_NAIVE_76
119.7
B_CELL_NAIVE_77
119.2
B_CELL_NAIVE_78
118.3
B_CELL_NAIVE_79
118.2
B_CELL_NAIVE_80
118.1
B_CELL_NAIVE_81
116.8
B_CELL_NAIVE_82
115.2
B_CELL_NAIVE_83
115.0
B_CELL_NAIVE_84
113.8
B_CELL_NAIVE_85
112.5
B_CELL_NAIVE_86
112.5
B_CELL_NAIVE_87
112.0
B_CELL_NAIVE_88
107.6
B_CELL_NAIVE_89
107.2
B_CELL_NAIVE_90
105.4
B_CELL_NAIVE_91
101.3
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