A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
218.3
nTPM
Monaco:
410.1
nTPM
Schmiedel:
260.9
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
218.3
HPA sample
nTPM
Classical monocyte nTPM: 172.6
Samples: 6
Max nTPM: 231.1
Min nTPM: 125.7
P10809_1003
231.1
P10809_1020
184.2
P10809_1039
207.6
P10809_1058
125.7
P10809_1080
156.0
P10809_1107
131.0
Intermediate monocyte nTPM: 176.9
Samples: 6
Max nTPM: 225.3
Min nTPM: 132.7
P10809_1004
193.3
P10809_1023
192.4
P10809_1042
180.8
P10809_1061
225.3
P10809_1081
136.7
P10809_1108
132.7
Non-classical monocyte nTPM: 218.3
Samples: 5
Max nTPM: 330.2
Min nTPM: 138.0
P10809_1005
220.1
P10809_1053
239.5
P10809_1072
330.2
P10809_1082
138.0
P10809_1109
163.6
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
410.1
Monaco sample
nTPM
Classical monocyte nTPM: 341.5
Samples: 4
Max nTPM: 399.0
Min nTPM: 304.3
RHH5313_R3680
320.6
RHH5221_R3593
399.0
RHH5250_R3622
341.9
RHH5279_R3651
304.3
Intermediate monocyte nTPM: 324.4
Samples: 4
Max nTPM: 388.2
Min nTPM: 281.3
RHH5314_R3681
281.3
RHH5222_R3594
388.2
RHH5251_R3623
307.8
RHH5280_R3652
320.4
Non-classical monocyte nTPM: 410.1
Samples: 4
Max nTPM: 467.4
Min nTPM: 363.2
RHH5315_R3682
403.5
RHH5223_R3595
467.4
RHH5252_R3624
406.3
RHH5281_R3653
363.2
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
260.9
Schmiedel sample id
TPM
Classical monocyte TPM: 166.8
Samples: 91
Max TPM: 230.0
Min TPM: 113.5
MONOCYTES_1
230.0
MONOCYTES_2
226.8
MONOCYTES_3
217.1
MONOCYTES_4
212.7
MONOCYTES_5
210.0
MONOCYTES_6
207.7
MONOCYTES_7
205.8
MONOCYTES_8
205.0
MONOCYTES_9
204.8
MONOCYTES_10
200.4
MONOCYTES_11
195.7
MONOCYTES_12
194.5
MONOCYTES_13
193.7
MONOCYTES_14
192.5
MONOCYTES_15
192.3
MONOCYTES_16
192.2
MONOCYTES_17
191.8
MONOCYTES_18
191.4
MONOCYTES_19
190.3
MONOCYTES_20
188.2
MONOCYTES_21
187.6
MONOCYTES_22
187.0
MONOCYTES_23
182.1
MONOCYTES_24
181.5
MONOCYTES_25
181.0
MONOCYTES_26
178.7
MONOCYTES_27
178.6
MONOCYTES_28
178.2
MONOCYTES_29
178.2
MONOCYTES_30
177.2
MONOCYTES_31
176.7
MONOCYTES_32
176.7
MONOCYTES_33
173.8
MONOCYTES_34
173.7
MONOCYTES_35
173.5
MONOCYTES_36
173.2
MONOCYTES_37
172.8
MONOCYTES_38
172.4
MONOCYTES_39
172.3
MONOCYTES_40
170.1
MONOCYTES_41
169.8
MONOCYTES_42
169.0
MONOCYTES_43
168.8
MONOCYTES_44
168.7
MONOCYTES_45
167.6
MONOCYTES_46
167.2
MONOCYTES_47
167.1
MONOCYTES_48
166.3
MONOCYTES_49
165.7
MONOCYTES_50
165.5
MONOCYTES_51
164.8
MONOCYTES_52
164.8
MONOCYTES_53
163.9
MONOCYTES_54
161.7
MONOCYTES_55
160.9
MONOCYTES_56
160.3
MONOCYTES_57
159.5
MONOCYTES_58
158.2
MONOCYTES_59
157.9
MONOCYTES_60
157.8
MONOCYTES_61
155.5
MONOCYTES_62
154.1
MONOCYTES_63
151.8
MONOCYTES_64
151.4
MONOCYTES_65
151.3
MONOCYTES_66
151.2
MONOCYTES_67
150.6
MONOCYTES_68
150.0
MONOCYTES_69
147.0
MONOCYTES_70
146.6
MONOCYTES_71
145.8
MONOCYTES_72
143.9
MONOCYTES_73
143.8
MONOCYTES_74
141.8
MONOCYTES_75
141.0
MONOCYTES_76
139.2
MONOCYTES_77
137.7
MONOCYTES_78
136.5
MONOCYTES_79
136.1
MONOCYTES_80
136.0
MONOCYTES_81
135.1
MONOCYTES_82
132.8
MONOCYTES_83
132.6
MONOCYTES_84
132.5
MONOCYTES_85
131.8
MONOCYTES_86
126.0
MONOCYTES_87
125.1
MONOCYTES_88
124.9
MONOCYTES_89
121.0
MONOCYTES_90
116.6
MONOCYTES_91
113.5
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Non-classical monocyte TPM: 260.9
Samples: 90
Max TPM: 383.7
Min TPM: 198.1
M2_1
383.7
M2_2
382.2
M2_3
357.6
M2_4
351.6
M2_5
350.7
M2_6
342.1
M2_7
341.9
M2_8
335.9
M2_9
326.6
M2_10
320.6
M2_11
313.4
M2_12
308.6
M2_13
306.5
M2_14
303.5
M2_15
301.1
M2_16
293.6
M2_17
292.0
M2_18
291.9
M2_19
290.4
M2_20
287.1
M2_21
285.4
M2_22
285.0
M2_23
284.0
M2_24
282.6
M2_25
278.6
M2_26
278.0
M2_27
277.9
M2_28
275.0
M2_29
273.4
M2_30
267.5
M2_31
267.1
M2_32
265.7
M2_33
263.1
M2_34
263.0
M2_35
262.7
M2_36
261.6
M2_37
261.3
M2_38
260.9
M2_39
260.1
M2_40
259.3
M2_41
259.1
M2_42
259.0
M2_43
257.4
M2_44
255.0
M2_45
252.3
M2_46
250.0
M2_47
249.8
M2_48
249.0
M2_49
248.6
M2_50
248.0
M2_51
246.0
M2_52
243.2
M2_53
242.7
M2_54
242.0
M2_55
241.1
M2_56
241.0
M2_57
240.8
M2_58
240.5
M2_59
239.2
M2_60
238.9
M2_61
236.5
M2_62
236.3
M2_63
231.9
M2_64
231.7
M2_65
230.0
M2_66
229.0
M2_67
228.5
M2_68
228.5
M2_69
228.2
M2_70
227.4
M2_71
227.1
M2_72
226.1
M2_73
226.0
M2_74
225.4
M2_75
224.7
M2_76
224.6
M2_77
222.5
M2_78
221.4
M2_79
219.1
M2_80
218.4
M2_81
217.6
M2_82
217.3
M2_83
216.1
M2_84
215.4
M2_85
214.8
M2_86
209.3
M2_87
208.2
M2_88
203.9
M2_89
202.9
M2_90
198.1
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