MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:10.1 nTPM
HPA Brain:31.4 nTPM
GTEx:10.1 nTPM
FANTOM5:13.1 Scaled Tags Per Million
Pig:21.5 nTPM
Mouse:6.8 nTPM
Allen mouse:1.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 31.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 30.4
2586 Male, age 75, left hemisphere 44.9
2828 Female, age 72, unknown 37.8
2666 Male, age 74, left hemisphere 33.1
1827 Male, age 72, unknown 32.5
2019 Male, age 18, unknown 32.5
2219 Male, age 76, both hemispheres 28.5
1830 Male, age 51, unknown 25.8
1833 Male, age 53, unknown 24.6
1870 Female, age 42, unknown 22.1
2411 Female, age 72, unknown 22.1
Dorsal raphe nucleus
nTPM: 21.7
2750 Male, age 76, both hemispheres 24.6
1828 Male, age 53, unknown 23.5
2047 Male, age 72, unknown 20.7
2016 Female, age 72, unknown 20.3
2298 Female, age 72, unknown 19.3
Inferior colliculus
nTPM: 25.8
1890 Male, age 53, unknown 26.5
1848 Female, age 42, unknown 26.3
2849 Male, age 72, unknown 26.3
2097 Female, age 72, unknown 24.1
Median raphe nucleus
nTPM: 23.3
2220 Male, age 76, midline 23.3
Periaquaductal grey, anterior
nTPM: 30.0
1795 Male, age 51, unknown 33.1
2502 Female, age 75, unknown 29.0
1947 Male, age 18, unknown 27.8
Periaquaductal grey, dorsal
nTPM: 22.6
2464 Female, age 72, unknown 24.4
1831 Male, age 72, unknown 24.0
2850 Male, age 76, both hemispheres 21.9
1840 Male, age 53, unknown 19.9
Periaquaductal grey, lateral
nTPM: 22.4
2053 Male, age 18, unknown 23.3
2140 Male, age 76, both hemispheres 22.2
2272 Male, age 74, both hemispheres 21.6
Pretectal area
nTPM: 30.5
1816 Male, age 51, unknown 41.1
2007 Male, age 72, unknown 40.5
1817 Female, age 42, unknown 37.5
1815 Male, age 53, unknown 34.9
1944 Female, age 72, unknown 34.3
2407 Male, age 75, both hemispheres 31.6
2667 Female, age 75, unknown 27.8
2316 Male, age 76, right hemisphere 26.3
2825 Male, age 18, unknown 22.8
2224 Female, age 72, unknown 19.4
2273 Male, age 74, both hemispheres 19.0
Red nucleus
nTPM: 28.1
2584 Male, age 75, left hemisphere 39.4
2785 Male, age 18, unknown 35.9
2588 Male, age 74, left hemisphere 33.9
2823 Male, age 76, right hemisphere 29.3
2769 Male, age 72, unknown 27.7
1904 Male, age 53, unknown 26.1
2227 Male, age 72, unknown 26.0
1865 Male, age 51, unknown 25.0
2503 Female, age 72, unknown 24.8
2725 Female, age 75, unknown 24.7
1954 Female, age 42, unknown 22.9
1821 Female, age 72, unknown 21.1
Substantia nigra
nTPM: 27.0
2665 Male, age 74, both hemispheres 35.7
2583 Male, age 75, right hemisphere 33.3
1889 Female, age 72, unknown 29.4
1916 Female, age 42, unknown 28.5
1941 Male, age 53, unknown 28.2
1851 Male, age 51, unknown 27.2
2590 Female, age 75, unknown 26.4
2699 Male, age 18, unknown 22.5
2409 Female, age 72, unknown 20.6
2241 Male, age 72, unknown 18.2
Superior colliculus
nTPM: 31.4
2668 Female, age 75, unknown 38.0
2664 Male, age 75, both hemispheres 37.6
1796 Male, age 53, unknown 36.5
2261 Male, age 18, unknown 34.1
2087 Female, age 72, unknown 33.1
1995 Male, age 72, unknown 30.2
1913 Female, age 42, unknown 29.6
1895 Male, age 76, right hemisphere 26.1
2587 Male, age 74, left hemisphere 24.8
1839 Male, age 51, unknown 24.3
Ventral tegmental area
nTPM: 25.4
2223 Female, age 72, unknown 28.8
2218 Male, age 76, both hemispheres 26.6
1942 Male, age 51, unknown 25.9
1915 Female, age 42, unknown 24.7
2410 Female, age 72, unknown 24.2
2021 Male, age 53, unknown 22.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 10.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 10.1
Samples: 183

Max nTPM: 27.1
Min nTPM: 4.4
Std nTPM: 2.9
Median nTPM: 10.0
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 27.1
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 22.9
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 21.4
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 19.5
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 16.1
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 15.7
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 14.8
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 14.3
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 14.2
GTEX-1KD4Q-0011-R2a-SM-F649I 40-49 years, male 14.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 13.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 13.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 13.1
FF:10158-103A5 76 years, female 13.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 21.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 16.9
Samples: 4

Max nTPM: 19.4
Min nTPM: 14.6
Sample A Female 16.7
Sample B Female 14.6
Sample C Male 19.4
Sample D Male 16.8
Midbrain
nTPM: 19.6
Samples: 4

Max nTPM: 26.9
Min nTPM: 13.4
Sample A Female 17.1
Sample B Female 13.4
Sample C Male 26.9
Sample D Male 21.0
Periaqueductal gray
nTPM: 13.2
Samples: 3

Max nTPM: 14.2
Min nTPM: 12.2
Sample B Female 13.1
Sample C Male 14.2
Sample D Male 12.2
Superior colliculi
nTPM: 21.5
Samples: 4

Max nTPM: 25.2
Min nTPM: 18.2
Sample A Female 19.2
Sample B Female 18.2
Sample C Male 25.2
Sample D Male 23.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 6.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 6.8
Samples: 4

Max nTPM: 7.4
Min nTPM: 6.2
Sample A Male 7.4
Sample B Male 6.2
Sample C Female 6.3
Sample D Female 7.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.4
69980202 Antisense, RP_050512_04_A12, Mouse strain C57BL/6J (56 days, male) 1.4

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