MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:32.8 nTPM
HPA Brain:81.0 nTPM
GTEx:32.8 nTPM
FANTOM5:41.0 Scaled Tags Per Million
Pig:33.8 nTPM
Mouse:15.5 nTPM
Allen mouse:2.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 81.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 77.6
2586 Male, age 75, left hemisphere 107.4
2828 Female, age 72, unknown 93.5
2666 Male, age 74, left hemisphere 89.3
1827 Male, age 72, unknown 80.9
2219 Male, age 76, both hemispheres 76.1
1833 Male, age 53, unknown 68.9
1830 Male, age 51, unknown 68.5
1870 Female, age 42, unknown 68.4
2411 Female, age 72, unknown 63.5
2019 Male, age 18, unknown 60.0
Dorsal raphe nucleus
nTPM: 65.2
2047 Male, age 72, unknown 73.2
2016 Female, age 72, unknown 66.5
2750 Male, age 76, both hemispheres 63.8
1828 Male, age 53, unknown 63.7
2298 Female, age 72, unknown 58.7
Inferior colliculus
nTPM: 74.5
2849 Male, age 72, unknown 88.5
1848 Female, age 42, unknown 74.5
1890 Male, age 53, unknown 69.3
2097 Female, age 72, unknown 65.5
Median raphe nucleus
nTPM: 64.2
2220 Male, age 76, midline 64.2
Periaquaductal grey, anterior
nTPM: 81.0
2502 Female, age 75, unknown 83.8
1795 Male, age 51, unknown 83.4
1947 Male, age 18, unknown 75.9
Periaquaductal grey, dorsal
nTPM: 69.4
2464 Female, age 72, unknown 70.8
2850 Male, age 76, both hemispheres 70.4
1840 Male, age 53, unknown 69.1
1831 Male, age 72, unknown 67.3
Periaquaductal grey, lateral
nTPM: 65.0
2053 Male, age 18, unknown 70.0
2140 Male, age 76, both hemispheres 70.0
2272 Male, age 74, both hemispheres 54.9
Pretectal area
nTPM: 66.5
2825 Male, age 18, unknown 80.5
2407 Male, age 75, both hemispheres 79.6
2316 Male, age 76, right hemisphere 71.8
2007 Male, age 72, unknown 67.3
1815 Male, age 53, unknown 67.2
1816 Male, age 51, unknown 67.0
1817 Female, age 42, unknown 64.2
2667 Female, age 75, unknown 64.1
1944 Female, age 72, unknown 62.4
2224 Female, age 72, unknown 62.3
2273 Male, age 74, both hemispheres 45.5
Red nucleus
nTPM: 67.2
2584 Male, age 75, left hemisphere 90.7
2823 Male, age 76, right hemisphere 78.4
2725 Female, age 75, unknown 73.0
2769 Male, age 72, unknown 71.7
2588 Male, age 74, left hemisphere 69.6
2227 Male, age 72, unknown 67.7
2785 Male, age 18, unknown 65.1
2503 Female, age 72, unknown 62.1
1865 Male, age 51, unknown 61.8
1904 Male, age 53, unknown 56.5
1954 Female, age 42, unknown 55.3
1821 Female, age 72, unknown 54.4
Substantia nigra
nTPM: 67.5
2665 Male, age 74, both hemispheres 89.1
1941 Male, age 53, unknown 86.3
2583 Male, age 75, right hemisphere 72.0
2699 Male, age 18, unknown 70.5
2590 Female, age 75, unknown 68.3
1916 Female, age 42, unknown 68.2
1851 Male, age 51, unknown 64.2
1889 Female, age 72, unknown 61.4
2409 Female, age 72, unknown 48.0
2241 Male, age 72, unknown 47.4
Superior colliculus
nTPM: 72.7
2664 Male, age 75, both hemispheres 97.5
1839 Male, age 51, unknown 79.6
1796 Male, age 53, unknown 77.2
1895 Male, age 76, right hemisphere 72.5
2261 Male, age 18, unknown 71.0
1913 Female, age 42, unknown 69.9
2587 Male, age 74, left hemisphere 69.1
1995 Male, age 72, unknown 65.0
2668 Female, age 75, unknown 63.3
2087 Female, age 72, unknown 62.0
Ventral tegmental area
nTPM: 65.0
1942 Male, age 51, unknown 69.5
2223 Female, age 72, unknown 68.6
2218 Male, age 76, both hemispheres 66.9
2021 Male, age 53, unknown 65.1
1915 Female, age 42, unknown 61.6
2410 Female, age 72, unknown 58.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 32.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 32.8
Samples: 183

Max nTPM: 56.1
Min nTPM: 15.5
Std nTPM: 7.3
Median nTPM: 32.2
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 56.1
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 55.2
GTEX-1KD4Q-0011-R2a-SM-F649I 40-49 years, male 52.2
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 51.0
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 49.6
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 49.2
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 48.0
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 47.4
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 46.3
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 45.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 45.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 41.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 41.0
FF:10158-103A5 76 years, female 41.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 33.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 32.1
Samples: 4

Max nTPM: 35.8
Min nTPM: 29.2
Sample A Female 32.1
Sample B Female 29.2
Sample C Male 35.8
Sample D Male 31.4
Midbrain
nTPM: 33.1
Samples: 4

Max nTPM: 36.2
Min nTPM: 27.9
Sample A Female 34.8
Sample B Female 27.9
Sample C Male 36.2
Sample D Male 33.5
Periaqueductal gray
nTPM: 28.5
Samples: 3

Max nTPM: 32.7
Min nTPM: 26.1
Sample B Female 26.8
Sample C Male 32.7
Sample D Male 26.1
Superior colliculi
nTPM: 33.8
Samples: 4

Max nTPM: 38.6
Min nTPM: 30.5
Sample A Female 33.1
Sample B Female 30.5
Sample C Male 32.9
Sample D Male 38.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 15.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 15.5
Samples: 4

Max nTPM: 17.2
Min nTPM: 13.2
Sample A Male 16.9
Sample B Male 14.7
Sample C Female 13.2
Sample D Female 17.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.2
71307244 Antisense, RP_050825_01_E05, Mouse strain C57BL/6J (56 days, male) 2.2

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