On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
77.7
nTPM
HPA Brain:
104.9
nTPM
GTEx:
77.7
nTPM
FANTOM5:
103.4
Scaled Tags Per Million
Macaque:
71.7
nTPM
Mouse:
32.3
nTPM
Rat:
49.9
nTPM
Pig:
69.7
nTPM
SPINAL CORD - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - SPINAL CORD, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Excitatory (VGLUT1) ETV1+ Z...
c-2
Excitatory (VGLUT2) SST+ GR...
c-3
Excitatory (VGLUT2)
c-4
Excitatory (VGLUT2) SST+ CX...
c-5
Excitatory (VGLUT2) SST+ TA...
c-6
Excitatory (VGLUT2) SST+ CA...
c-7
Excitatory (VGLUT2) SST+
c-8
Excitatory (VGLUT2) CXCL14+
c-9
Excitatory (VGLUT2) SST+
c-10
Inhibitory (GAD1/2) SLC6A5+...
c-11
Inhibitory (GAD1/2) PENK+ E...
c-12
Inhibitory (GAD1/2) SLC6A5+...
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2) CALB1+
c-15
Inhibitory (GAD1/2) SLC6A5+...
c-16
CALB1+ TRH+
c-17
Inhibitory (GAD1/2) SLC6A5+
c-18
Inhibitory (GAD1/2) SLC6A5+...
c-19
Inhibitory (GAD1/2) SLC6A5+...
c-20
Excitatory (VGLUT2) PENK+ T...
c-21
Inhibitory (GAD2) SLC6A5+ N
c-22
Inhibitory (GAD1/2) TAC1+ K...
c-23
Inhibitory (GAD1/2) SLC6A5+...
c-24
Excitatory (VGLUT2) TAC1+
c-25
Excitatory (VGLUT2)
c-26
Inhibitory (GAD1/2) SLC6A5+
c-27
Excitatory (VGLUT2) SST+ CA...
c-28
Inhibitory (GAD1/2) SLC6A5+...
c-29
Unassigned
c-30
Excitatory (VGLUT2) PENK+
c-31
Inhibitory (GAD1/2) PVALB+ ...
c-32
Excitatory (VGLUT2) PENK+ S...
c-33
Excitatory (VGLUT2)
c-34
Excitatory (VGLUT2) SST+ TA...
c-35
Excitatory (VGLUT2)
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - SPINAL CORD, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Oligodendrocytes
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Oligodendrocytes
c-7
Microglia
c-8
Astrocytes (CD44+)
c-9
Astrocytes (CD44+)
c-10
Astrocytes
c-11
Lymphocytes
c-12
Vascular endothelial cells
c-13
Microglia (SPP1+ HIF1A+)
c-14
Ependymal cells
c-15
Oligodendrocyte & OPC doubl
c-16
Pericytes
c-17
Fibroblasts
c-18
Immature oligodendrocytes
c-19
Macrophages
c-20
Myelinating schwann cells
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SPINAL CORD - PROTEINTALKS DB MS
Median intensity
19619
Sample
Intensity
Spinal cord_01
20940
Spinal cord_02
15396
Spinal cord_03
27096
Spinal cord_04
18298
Spinal cord_05
18208
Spinal cord_06
23191
Spinal cord_07
17996
Spinal cord_08
22331
SPINAL CORD - HPA Brain Stereo-seq
SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
104.9
Sample id
Sample description
nTPM
Anterior funiculus (white matter) nTPM: 103.0
2734
Male, age 80, both hemispheres
120.5
2818
Female, age 79, both hemispheres
100.2
2819
Male, age 47, both hemispheres
97.3
2193
Male, age 75, both hemispheres
93.9
Cervical spinal cord, central gray nTPM: 77.5
1981
Female, age 72, midline
91.4
2816
Male, age 47, midline
81.2
2565
Male, age 75, midline
75.5
2194
Female, age 79, both hemispheres
73.0
2048
Male, age 55, midline
66.4
Cervical spinal cord, dorsal horn nTPM: 78.2
2173
Female, age 72, unknown
106.3
2296
Male, age 66, both hemispheres
106.1
2069
Male, age 47, both hemispheres
72.6
1877
Male, age 55, unknown
65.3
2721
Male, age 90, both hemispheres
62.2
2297
Male, age 75, both hemispheres
56.7
Cervical spinal cord, ventral horn nTPM: 86.3
2098
Female, age 72, unknown
94.5
2068
Male, age 55, unknown
88.9
2820
Female, age 79, both hemispheres
85.5
2295
Male, age 66, both hemispheres
85.3
2809
Male, age 90, both hemispheres
82.2
2480
Male, age 75, both hemispheres
81.7
Dorsal funiculus (white matter) nTPM: 104.9
2810
Male, age 90, both hemispheres
120.1
2817
Male, age 47, both hemispheres
109.0
2064
Female, age 79, both hemispheres
107.8
2128
Male, age 75, both hemispheres
97.5
2812
Male, age 66, both hemispheres
90.3
Lateral funiculus (white matter) nTPM: 104.5
2099
Male, age 90, both hemispheres
115.2
2094
Female, age 79, both hemispheres
114.4
2192
Male, age 75, both hemispheres
101.7
2294
Male, age 66, both hemispheres
86.7
SPINAL CORD - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
77.7
GTEx sample id
Sample description
nTPM
Brain - Spinal cord (cervical c-1) Average nTPM: 77.7
Samples: 204
Max nTPM: 152.9
Min nTPM: 25.8
Std nTPM: 21.9
Median nTPM: 76.6
GTEX-13N1W-0011-R9b-SM-5MR4R
70-79 years, male
152.9
GTEX-1GTWX-0011-R9a-SM-ADEH4
60-69 years, male
149.1
GTEX-139UW-0011-R9b-SM-5LZYT
60-69 years, male
143.6
GTEX-1A32A-0011-R9b-SM-7MGXD
50-59 years, female
136.9
GTEX-13PLJ-0011-R9b-SM-5O9DV
60-69 years, female
132.2
GTEX-1PIIG-0011-R9b-SM-G8OLU
30-39 years, male
123.8
GTEX-16Z82-0011-R9a-SM-7DUFA
60-69 years, male
122.0
GTEX-1CAV2-0011-R9b-SM-9WG5M
40-49 years, female
121.8
GTEX-ZV68-0011-R9b-SM-GNTB9
50-59 years, female
117.7
GTEX-XMD1-0011-R9A-SM-4AT49
60-69 years, male
115.7
GTEX-13PVQ-0011-R9b-SM-5LU3B
50-59 years, male
113.5
GTEX-1I1CD-0011-R9a-SM-CMKHB
60-69 years, female
112.3
GTEX-11UD2-0011-R9b-SM-DO926
50-59 years, male
110.7
GTEX-1HBPH-0011-R9a-SM-CMKH3
40-49 years, female
110.3
GTEX-145LU-0011-R9b-SM-5SI66
50-59 years, male
109.8
GTEX-148VJ-0011-R9b-SM-5SI77
70-79 years, male
108.9
GTEX-1GN1U-0011-R9b-SM-CMKFW
50-59 years, female
108.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY
60-69 years, male
107.9
GTEX-1RDX4-0011-R9b-SM-G8LMG
50-59 years, female
107.2
GTEX-117YW-0011-R9a-SM-GHWPQ
50-59 years, male
106.3
GTEX-14PJM-0011-R9b-SM-6EU35
50-59 years, female
106.0
GTEX-17EVQ-0011-R9b-SM-79OJY
70-79 years, male
105.3
GTEX-1EH9U-0011-R9b-SM-9WG5T
60-69 years, male
103.7
GTEX-WVLH-0011-R9A-SM-H7OHH
50-59 years, male
103.7
GTEX-1IDJH-0011-R9a-SM-ADEIN
70-79 years, male
102.8
GTEX-WL46-0011-R9A-SM-3MJFP
50-59 years, male
102.5
GTEX-13OVL-0011-R9a-SM-5P9GX
50-59 years, male
101.8
GTEX-13S7M-0011-R9a-SM-5O9DW
60-69 years, female
101.0
GTEX-1RAZS-0011-R9b-SM-G8OMS
50-59 years, male
100.9
GTEX-X4EP-0011-R9B-SM-4QASI
60-69 years, female
100.9
GTEX-1JMLX-0011-R9a-SM-EYYXM
50-59 years, male
100.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L
70-79 years, female
100.7
GTEX-1F6I4-0011-R9a-SM-CMKFU
60-69 years, male
100.4
GTEX-1CAMQ-0011-R9a-SM-9WG5Z
40-49 years, male
99.6
GTEX-1GZHY-0011-R9a-SM-9WG5R
50-59 years, female
99.1
GTEX-1GZ2Q-0011-R9a-SM-9WG7A
40-49 years, male
98.5
GTEX-16XZZ-0011-R9b-SM-7DHKX
60-69 years, male
97.7
GTEX-1QMI2-0011-R9a-SM-G8ON7
60-69 years, male
97.3
GTEX-14BIL-0011-R9a-SM-5SI7A
50-59 years, male
96.7
GTEX-1212Z-0011-R9b-SM-GHWPM
60-69 years, male
96.5
GTEX-1KANB-0011-R9b-SM-EZ6MO
50-59 years, male
94.8
GTEX-14JFF-0011-R9b-SM-G9ERJ
60-69 years, male
94.7
GTEX-1F88F-0011-R9b-SM-9WG7L
60-69 years, female
94.4
GTEX-1HBPM-0011-R9b-SM-ARL7C
60-69 years, female
94.4
GTEX-1IL2U-0011-R9a-SM-GPRYC
60-69 years, male
94.4
GTEX-14PJO-0011-R9b-SM-62LE9
60-69 years, male
94.1
GTEX-15G19-0011-R9b-SM-7KUEE
60-69 years, male
93.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3
60-69 years, male
91.6
GTEX-16GPK-0011-R9a-SM-GPI9P
60-69 years, male
90.8
GTEX-T5JC-0011-R9A-SM-32PLV
20-29 years, male
90.8
GTEX-14BIN-0011-R9a-SM-5SI76
50-59 years, female
90.7
GTEX-1LG7Y-0011-R9a-SM-G8LMA
50-59 years, male
90.7
GTEX-1I1GS-0011-R9b-SM-CMKHF
60-69 years, male
90.6
GTEX-14ABY-0011-R9a-SM-5PNZK
50-59 years, male
90.0
GTEX-11ZU8-0011-R9b-SM-GHWOL
60-69 years, male
87.8
GTEX-131XW-0011-R9a-SM-5N9EO
50-59 years, female
87.6
GTEX-13FTY-0011-R9b-SM-5KM2U
40-49 years, female
87.5
GTEX-14E6C-0011-R9a-SM-6EU33
40-49 years, male
87.5
GTEX-1PWST-0011-R9a-SM-G8OMQ
70-79 years, male
87.5
GTEX-1JMQL-0011-R9b-SM-G8LLH
50-59 years, female
86.8
GTEX-1R46S-0011-R9a-SM-EZ6N7
60-69 years, female
86.8
GTEX-14BMV-0011-R9b-SM-5ZZUA
50-59 years, male
86.3
GTEX-11DXW-0011-R9a-SM-GHWOE
40-49 years, male
86.1
GTEX-1PPGY-0011-R9a-SM-G8LMR
60-69 years, male
86.0
GTEX-YJ89-0011-R9a-SM-4SOK7
60-69 years, male
86.0
GTEX-1HBPI-0011-R9b-SM-ARL76
50-59 years, male
85.4
GTEX-1MCQQ-0011-R9b-SM-G8OKM
60-69 years, male
84.6
GTEX-139T4-0011-R9b-SM-5HL6S
50-59 years, female
84.5
GTEX-XLM4-0011-R9A-SM-4AT45
60-69 years, male
84.3
GTEX-1F52S-0011-R9a-SM-9WG62
60-69 years, female
84.0
GTEX-13QJC-0011-R9b-SM-5PNX3
60-69 years, female
83.7
GTEX-1C6VQ-0011-R9a-SM-7SB85
50-59 years, male
83.7
GTEX-ZAJG-0011-R9a-SM-GNTAY
50-59 years, female
83.7
GTEX-147GR-0011-R9a-SM-5S2UY
60-69 years, male
83.2
GTEX-1B8L1-0011-R9b-SM-9WG5U
60-69 years, male
83.0
GTEX-13FXS-0011-R9a-SM-5K7UI
50-59 years, male
82.4
GTEX-113JC-0011-R9a-SM-H6Q8K
50-59 years, female
82.3
GTEX-15SHU-0011-R9a-SM-GNIOE
40-49 years, female
82.1
GTEX-1J8EW-0011-R9b-SM-D4P2F
60-69 years, female
81.7
GTEX-1LSNL-0011-R9b-SM-EYYWK
50-59 years, male
81.5
GTEX-1C6VS-0011-R9b-SM-9WG5W
60-69 years, male
81.4
GTEX-ZF28-0011-R9a-SM-4WWDY
60-69 years, male
81.3
GTEX-1GF9V-0011-R9a-SM-CL53K
60-69 years, male
81.1
GTEX-13CZV-0011-R9a-SM-5LZXT
60-69 years, male
81.0
GTEX-1EU9M-0011-R9a-SM-9WG61
60-69 years, male
80.9
GTEX-1I19N-0011-R9a-SM-CMKHN
70-79 years, male
80.9
GTEX-111VG-0011-R9b-SM-GHWOB
60-69 years, male
80.8
GTEX-NL4W-0011-R9a-SM-2I3G1
50-59 years, male
80.7
GTEX-11ZVC-0011-R9a-SM-57WC5
50-59 years, female
80.3
GTEX-1A8G7-0011-R9b-SM-7IGQH
60-69 years, male
80.1
GTEX-1JMOU-0011-R9b-SM-EY5YI
60-69 years, female
80.0
GTEX-15ER7-0011-R9b-SM-6PALF
20-29 years, female
79.8
GTEX-12126-0011-R9b-SM-5BC6P
20-29 years, male
79.5
GTEX-ZE9C-0011-R9a-SM-4WWCY
60-69 years, male
79.5
GTEX-13SLX-0011-R9b-SM-5SI6X
50-59 years, female
79.4
GTEX-1JMQJ-0011-R9b-SM-G8OKN
50-59 years, male
79.3
GTEX-13N2G-0011-R9b-SM-5MR4E
60-69 years, male
78.8
GTEX-1EKGG-0011-R9a-SM-CMKFV
60-69 years, male
78.5
GTEX-1R9PO-0011-R9a-SM-G8LKP
60-69 years, female
78.3
GTEX-13JUV-0011-R9a-SM-5LZX3
40-49 years, female
77.2
GTEX-13G51-0011-R9b-SM-GHWPS
60-69 years, male
77.1
GTEX-13NZA-0011-R9b-SM-5MR5I
60-69 years, male
76.7
GTEX-1IY9M-0011-R9b-SM-D3L8J
60-69 years, male
76.5
GTEX-1JMPZ-0011-R9a-SM-G8OLH
30-39 years, male
76.5
GTEX-1NV8Z-0011-R9b-SM-G8OME
60-69 years, male
76.5
GTEX-1J8JJ-0011-R9a-SM-ACKVF
60-69 years, female
75.5
GTEX-1JN6P-0011-R9a-SM-G8LM9
60-69 years, male
74.9
GTEX-1N5O9-0011-R9a-SM-G8LLD
60-69 years, male
74.8
GTEX-15EO6-0011-R9a-SM-6PALG
50-59 years, male
74.2
GTEX-NPJ7-0011-R9a-SM-G8W5X
60-69 years, female
74.2
GTEX-13O1R-0011-R9b-SM-5KM33
60-69 years, male
73.6
GTEX-1B933-0011-R9a-SM-79OOR
50-59 years, female
73.6
GTEX-1H23P-0011-R9a-SM-CM2T1
60-69 years, male
73.6
GTEX-ZZPT-0011-R9a-SM-GOQYS
50-59 years, male
73.6
GTEX-1LSVX-0011-R9b-SM-G8LL2
60-69 years, male
73.2
GTEX-11ONC-0011-R9b-SM-5NQ8J
60-69 years, male
73.1
GTEX-12WSH-0011-R9b-SM-5LZUG
50-59 years, male
72.2
GTEX-1O9I2-0011-R9b-SM-G8OKW
50-59 years, male
72.1
GTEX-QDT8-0011-R9A-SM-CYPRD
30-39 years, female
72.1
GTEX-1CB4H-0011-R9a-SM-CKZNL
60-69 years, female
71.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ
70-79 years, male
71.3
GTEX-1269C-0011-R9b-SM-GI4WM
60-69 years, female
71.0
GTEX-1GN2E-0011-R9b-SM-9WG7F
60-69 years, male
71.0
GTEX-1LB8K-0011-R9a-SM-EZ6MP
50-59 years, male
70.9
GTEX-ZVZQ-0011-R9a-SM-51MRH
60-69 years, female
70.8
GTEX-11EMC-0011-R9b-SM-DO921
60-69 years, female
70.7
GTEX-1GF9W-0011-R9b-SM-9WG7J
60-69 years, male
69.8
GTEX-11NV4-0011-R9a-SM-GHWPP
60-69 years, male
69.6
GTEX-12584-0011-R9b-SM-GI4WC
40-49 years, male
69.3
GTEX-14JIY-0011-R9a-SM-6EU34
60-69 years, male
68.8
GTEX-1POEN-0011-R9b-SM-G8LL1
30-39 years, female
68.8
GTEX-14BIM-0011-R9a-SM-6LLJL
60-69 years, female
68.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ
60-69 years, male
68.4
GTEX-12696-0011-R9a-SM-GHWPX
60-69 years, male
68.2
GTEX-11GSO-0011-R9b-SM-GI4VN
60-69 years, male
68.1
GTEX-15DYW-0011-R9b-SM-6PALB
60-69 years, female
68.0
GTEX-1HGF4-0011-R9a-SM-ADEH9
60-69 years, male
67.9
GTEX-117XS-0011-R9b-SM-GHWOG
60-69 years, male
67.8
GTEX-1MJK2-0011-R9b-SM-EZ6MZ
50-59 years, male
67.7
GTEX-13112-0011-R9b-SM-GHWOV
50-59 years, male
67.2
GTEX-1H3NZ-0011-R9a-SM-ADEH7
60-69 years, male
67.2
GTEX-1KD4Q-0011-R9a-SM-G8LLU
40-49 years, male
67.0
GTEX-13QIC-0011-R9a-SM-GI4WO
60-69 years, female
66.8
GTEX-13VXU-0011-R9b-SM-5SI73
50-59 years, male
66.4
GTEX-14PN4-0011-R9a-SM-6LLH9
50-59 years, male
66.1
GTEX-15DCD-0011-R9b-SM-7KUED
70-79 years, female
65.6
GTEX-1192X-0011-R9b-SM-DO934
50-59 years, male
65.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO
70-79 years, male
64.9
GTEX-1H1DF-0011-R9b-SM-CM2RN
40-49 years, female
63.4
GTEX-1J1OQ-0011-R9b-SM-GRR22
40-49 years, female
62.7
GTEX-PWO3-0011-R9A-SM-EVR2V
60-69 years, female
62.5
GTEX-14E7W-0011-R9a-SM-62LE6
70-79 years, male
62.1
GTEX-13PL6-0011-R9b-SM-5O9CH
40-49 years, female
61.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1
50-59 years, female
61.3
GTEX-YFC4-0011-R9a-SM-4SOK4
40-49 years, female
61.0
GTEX-11NUK-0011-R9a-SM-GI4XG
50-59 years, male
60.7
GTEX-1A8G6-0011-R9a-SM-GOQZR
60-69 years, male
59.7
GTEX-1HFI6-0011-R9b-SM-CMKH4
40-49 years, male
59.4
GTEX-OHPN-0011-R9A-SM-5TDEJ
60-69 years, female
59.4
GTEX-11ZUS-0011-R9b-SM-5BC76
30-39 years, male
58.8
GTEX-13OW5-0011-R9b-SM-5O9CL
60-69 years, male
58.8
GTEX-16NPV-0011-R9b-SM-79ONF
50-59 years, female
58.5
GTEX-1I1GV-0011-R9b-SM-ARZLE
60-69 years, male
58.2
GTEX-11ZTS-0011-R9b-SM-DO93Q
60-69 years, female
58.1
GTEX-13FLV-0011-R9b-SM-5L3DA
50-59 years, male
57.8
GTEX-OXRO-0011-R9A-SM-3NB1X
60-69 years, female
57.4
GTEX-T6MN-0011-R9A-SM-32QOZ
50-59 years, male
57.4
GTEX-ZAB4-0011-R9a-SM-4SOKG
40-49 years, male
57.4
GTEX-11DZ1-0011-R9a-SM-DO933
50-59 years, male
57.2
GTEX-1HSMO-0011-R9b-SM-CM2T2
60-69 years, male
56.9
GTEX-1IKJJ-0011-R9a-SM-ARZLI
60-69 years, male
56.7
GTEX-11WQK-0011-R9b-SM-5BC6N
50-59 years, male
56.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8
50-59 years, male
56.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR
60-69 years, female
55.3
GTEX-13NYS-0011-R9b-SM-5MR44
60-69 years, male
53.7
GTEX-15CHQ-0011-R9a-SM-6LLHX
60-69 years, male
53.4
GTEX-13SLW-0011-R9a-SM-5O9BT
70-79 years, male
53.2
GTEX-1IGQW-0011-R9b-SM-D4P25
60-69 years, male
52.2
GTEX-1GN73-0011-R9a-SM-CKZO5
60-69 years, male
51.3
GTEX-1QP6S-0011-R9a-SM-G8LMO
40-49 years, male
51.2
GTEX-1ICLZ-0011-R9a-SM-ARL7E
60-69 years, male
51.0
GTEX-131YS-0011-R9b-SM-5EQLY
60-69 years, female
49.8
GTEX-1H2FU-0011-R9b-SM-CE6S4
60-69 years, female
49.6
GTEX-12WSD-0011-R9a-SM-5GU6W
60-69 years, female
49.4
GTEX-13NYB-0011-R9b-SM-5MR5P
40-49 years, male
49.3
GTEX-1I1HK-0011-R9a-SM-CMKHK
60-69 years, male
49.3
GTEX-1JJ6O-0011-R9a-SM-EYYXP
60-69 years, male
49.3
GTEX-1LKK1-0011-R9a-SM-G8OLY
50-59 years, female
48.9
GTEX-1LH75-0011-R9b-SM-EY5Y9
50-59 years, female
48.1
GTEX-13CIG-0011-R9a-SM-5K7VU
50-59 years, male
47.6
GTEX-12WSC-0011-R9a-SM-5GU4U
50-59 years, male
47.4
GTEX-1H1DG-0011-R9b-SM-ACKVB
70-79 years, male
47.0
GTEX-15UF6-0011-R9b-SM-GOQZG
70-79 years, female
46.5
GTEX-1J8Q2-0011-R9b-SM-GPRYH
60-69 years, male
46.4
GTEX-13X6I-0011-R9b-SM-5PNZJ
60-69 years, male
44.7
GTEX-11GSP-0011-R9b-SM-5NQ77
60-69 years, female
44.6
GTEX-1LVA9-0011-R9a-SM-EYYWF
50-59 years, male
44.4
GTEX-15DDE-0011-R9b-SM-6M46U
50-59 years, female
44.2
GTEX-1HR98-0011-R9b-SM-ARL79
60-69 years, male
42.7
GTEX-TSE9-0011-R9A-SM-3DB7Q
60-69 years, female
42.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY
60-69 years, male
41.6
GTEX-13OVJ-0011-R9b-SM-5L3GD
50-59 years, female
36.9
GTEX-QVJO-0011-R9A-SM-2S1QH
60-69 years, female
32.6
GTEX-12WSI-0011-R9b-SM-GHWOU
50-59 years, male
25.8
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SPINAL CORD - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
71.7
Macaque sample
Sample description
nTPM
Dorsal spinal cord nTPM: 48.0
Samples: 2
Max nTPM: 69.2
Min nTPM: 26.7
Sample A
26.7
Sample B
69.2
Ventral spinal cord nTPM: 71.7
Samples: 1
Max nTPM: 71.7
Min nTPM: 71.7
Sample A
71.7
SPINAL CORD - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
69.7
Pig sample
Sample description
nTPM
Dorsal spinal cord nTPM: 61.6
Samples: 4
Max nTPM: 65.2
Min nTPM: 58.2
Sample A
Female
58.2
Sample B
Female
61.1
Sample C
Male
65.2
Sample D
Male
61.8
Ventral spinal cord nTPM: 69.7
Samples: 4
Max nTPM: 74.9
Min nTPM: 64.5
Sample A
Female
72.3
Sample B
Female
64.5
Sample C
Male
67.1
Sample D
Male
74.9
SPINAL CORD - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
32.3
Mouse sample
Sample description
nTPM
Spinal cord nTPM: 32.3
Samples: 4
Max nTPM: 33.2
Min nTPM: 31.0
Sample A
33.2
Sample B
32.6
Sample C
31.0
Sample D
32.3
SPINAL CORD - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
49.9
Rat sample
Sample description
nTPM
Ventral spinal cord nTPM: 49.9
Samples: 4
Max nTPM: 56.6
Min nTPM: 44.1
Sample A
56.6
Sample A
49.0
Sample A
49.7
Sample A
44.1
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The Human Protein Atlas project is funded
