HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: High
Neuronal cells: Low
RNA expressioni
Consensus:67.6 nTPM
HPA Brain:184.5 nTPM
GTEx:67.6 nTPM
FANTOM5:158.7 Scaled Tags Per Million
Pig:91.1 nTPM
Mouse:61.3 nTPM
Allen mouse:0.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA005730Antibody HPA006642
Glial cells Not detectedHigh
Neuronal cells Not detectedLow





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 184.5
Sample id Sample description nTPM
Hippocampus
nTPM: 171.6
1911 Female, age 85, right hemisphere 197.5
2621 Female, age 67, right hemisphere 189.6
1855 Male, age 76, left hemisphere 169.0
2148 Female, age 91, left hemisphere 166.7
2529 Female, age 94, left hemisphere 164.8
1898 Male, age 80, left hemisphere 142.0
Dentate gyrus
nTPM: 148.7
2531 Female, age 67, both hemispheres 191.9
2530 Female, age 94, left hemisphere 157.0
2246 Female, age 85, both hemispheres 148.3
2010 Male, age 76, both hemispheres 139.4
1927 Female, age 91, both hemispheres 137.0
2528 Male, age 74, both hemispheres 118.8
Entorhinal gyrus
nTPM: 160.8
2686 Male, age 75, right hemisphere 195.2
2117 Female, age 91, right hemisphere 164.3
1938 Female, age 85, left hemisphere 158.3
2613 Female, age 94, left hemisphere 156.9
1787 Male, age 76, left hemisphere 147.0
2764 Male, age 80, right hemisphere 143.2
Hippocampus, CA1
nTPM: 163.6
2045 Male, age 76, both hemispheres 195.9
2749 Male, age 80, left hemisphere 173.1
2082 Female, age 91, right hemisphere 162.1
1873 Female, age 85, both hemispheres 146.2
2527 Male, age 74, both hemispheres 140.4
Hippocampus, CA2
nTPM: 151.3
2113 Female, age 91, right hemisphere 184.6
1940 Female, age 85, left hemisphere 180.3
2437 Female, age 94, left hemisphere 150.6
1892 Male, age 76, both hemispheres 145.1
1963 Male, age 80, left hemisphere 128.0
2249 Male, age 74, both hemispheres 119.3
Hippocampus, CA3
nTPM: 160.4
2137 Male, age 80, left hemisphere 206.2
2861 Female, age 67, both hemispheres 176.6
1867 Male, age 76, both hemispheres 168.2
1891 Female, age 85, both hemispheres 168.2
2620 Female, age 94, left hemisphere 135.7
2436 Male, age 74, both hemispheres 107.5
Parahippocampal cortex
nTPM: 163.4
2245 Female, age 91, both hemispheres 195.1
2532 Female, age 72, left hemisphere 191.4
2622 Female, age 67, right hemisphere 189.4
2018 Male, age 76, both hemispheres 176.9
2693 Female, age 94, both hemispheres 159.5
2692 Male, age 74, both hemispheres 148.0
1933 Female, age 85, both hemispheres 147.6
2250 Female, age 67, right hemisphere 145.4
1990 Female, age 91, right hemisphere 143.7
1850 Male, age 80, both hemispheres 137.4
Perirhinal gyrus
nTPM: 162.3
1841 Female, age 85, right hemisphere 182.6
2521 Female, age 94, right hemisphere 168.7
2848 Male, age 76, right hemisphere 161.7
1794 Male, age 80, right hemisphere 157.9
1847 Female, age 91, left hemisphere 140.5
Subiculum
nTPM: 184.5
2438 Female, age 94, left hemisphere 220.0
2042 Male, age 76, both hemispheres 207.8
1901 Male, age 80, both hemispheres 187.0
2729 Female, age 91, right hemisphere 171.8
1977 Female, age 85, both hemispheres 164.2
2619 Male, age 74, both hemispheres 156.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 67.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 67.6
Samples: 255

Max nTPM: 184.3
Min nTPM: 24.5
Std nTPM: 26.4
Median nTPM: 62.6
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 184.3
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 183.0
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 173.4
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 159.8
GTEX-1KANB-0011-R1a-SM-F3K5M 50-59 years, male 152.5
GTEX-ZAJG-0011-R1a-SM-GQ1CV 50-59 years, female 152.5
GTEX-13PLJ-0011-R1a-SM-GJ3QF 60-69 years, female 150.0
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 149.3
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 128.8
GTEX-1N5O9-0011-R1b-SM-F3K4W 60-69 years, male 126.7
GTEX-1MJK2-0011-R1b-SM-F649H 50-59 years, male 122.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 158.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 158.7
FF:10153-102I9 76 years, female 177.2
FF:10169-103B7 60 years, female 140.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 91.1
Pig sample Sample description nTPM
Subiculum
nTPM: 91.1
Samples: 4

Max nTPM: 100.4
Min nTPM: 82.4
Sample A Female 96.2
Sample B Female 100.4
Sample C Male 85.5
Sample D Male 82.4
Dorsal hippocampus
nTPM: 87.6
Samples: 4

Max nTPM: 108.3
Min nTPM: 61.4
Sample A Female 106.5
Sample B Female 74.0
Sample C Male 108.3
Sample D Male 61.4
Entorhinal cortex
nTPM: 82.6
Samples: 4

Max nTPM: 93.2
Min nTPM: 74.4
Sample A Female 80.6
Sample B Female 93.2
Sample C Male 82.1
Sample D Male 74.4
Ventral hippocampus
nTPM: 87.1
Samples: 4

Max nTPM: 88.6
Min nTPM: 83.9
Sample A Female 88.5
Sample B Female 87.5
Sample C Male 88.6
Sample D Male 83.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 61.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 61.3
Samples: 4

Max nTPM: 65.1
Min nTPM: 56.8
Sample A Male 65.1
Sample B Male 64.6
Sample C Female 58.8
Sample D Female 56.8
Hippocampal formation
nTPM: 46.9
Samples: 4

Max nTPM: 51.9
Min nTPM: 39.6
Sample A Male 51.9
Sample B Male 39.6
Sample C Female 46.7
Sample D Female 49.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 0.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.7
69013579 Antisense, RP_050309_02_F01, Mouse strain C57BL/6J (56 days, male) 1.3
70431433 Antisense, RP_050309_02_F01, Mouse strain C57BL/6J (56 days, male) 0.8
70608511 Antisense, RP_050630_01_D11, Mouse strain C57BL/6J (56 days, male) 0.0

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