A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
8.5
nTPM
Monaco:
51.8
nTPM
Schmiedel:
53.3
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
8.5
HPA sample
nTPM
Memory B-cell nTPM: 2.5
Samples: 6
Max nTPM: 5.9
Min nTPM: 0.4
P10809_1017
2.1
P10809_1025
1.1
P10809_1044
0.4
P10809_1063
5.9
P10809_1092
3.2
P10809_1105
2.4
Naive B-cell nTPM: 8.5
Samples: 6
Max nTPM: 15.4
Min nTPM: 0.0
P10809_1011
12.6
P10809_1029
7.9
P10809_1048
0.0
P10809_1067
15.4
P10809_1091
8.5
P10809_1104
6.5
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
51.8
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 18.0
Samples: 4
Max nTPM: 21.2
Min nTPM: 14.1
RHH5310_R3677
14.1
RHH5218_R3590
19.0
RHH5247_R3619
21.2
RHH5276_R3648
17.9
Naive B-cell nTPM: 51.8
Samples: 4
Max nTPM: 75.7
Min nTPM: 21.0
RHH5308_R3675
50.6
RHH5216_R3588
21.0
RHH5245_R3617
75.7
RHH5274_R3646
59.8
Non-switched memory B-cell nTPM: 17.2
Samples: 4
Max nTPM: 23.2
Min nTPM: 13.2
RHH5309_R3676
16.6
RHH5217_R3589
23.2
RHH5246_R3618
15.6
RHH5275_R3647
13.2
Plasmablast nTPM: 20.7
Samples: 4
Max nTPM: 31.0
Min nTPM: 12.0
RHH5312_R3679
21.2
RHH5220_R3592
31.0
RHH5249_R3621
18.7
RHH5278_R3650
12.0
Switched memory B-cell nTPM: 16.5
Samples: 4
Max nTPM: 21.2
Min nTPM: 10.5
RHH5311_R3678
10.5
RHH5219_R3591
21.2
RHH5248_R3620
20.6
RHH5277_R3649
13.8
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
53.3
Schmiedel sample id
TPM
Naive B-cell TPM: 53.3
Samples: 91
Max TPM: 82.0
Min TPM: 34.6
B_CELL_NAIVE_1
82.0
B_CELL_NAIVE_2
74.9
B_CELL_NAIVE_3
70.4
B_CELL_NAIVE_4
69.3
B_CELL_NAIVE_5
68.6
B_CELL_NAIVE_6
68.4
B_CELL_NAIVE_7
67.9
B_CELL_NAIVE_8
67.9
B_CELL_NAIVE_9
66.0
B_CELL_NAIVE_10
65.9
B_CELL_NAIVE_11
65.6
B_CELL_NAIVE_12
65.1
B_CELL_NAIVE_13
64.8
B_CELL_NAIVE_14
63.7
B_CELL_NAIVE_15
63.4
B_CELL_NAIVE_16
63.4
B_CELL_NAIVE_17
63.0
B_CELL_NAIVE_18
62.8
B_CELL_NAIVE_19
62.6
B_CELL_NAIVE_20
62.6
B_CELL_NAIVE_21
62.4
B_CELL_NAIVE_22
62.4
B_CELL_NAIVE_23
58.4
B_CELL_NAIVE_24
58.4
B_CELL_NAIVE_25
58.3
B_CELL_NAIVE_26
58.3
B_CELL_NAIVE_27
58.1
B_CELL_NAIVE_28
58.0
B_CELL_NAIVE_29
56.6
B_CELL_NAIVE_30
56.4
B_CELL_NAIVE_31
55.6
B_CELL_NAIVE_32
55.1
B_CELL_NAIVE_33
55.1
B_CELL_NAIVE_34
55.1
B_CELL_NAIVE_35
55.0
B_CELL_NAIVE_36
54.8
B_CELL_NAIVE_37
53.6
B_CELL_NAIVE_38
53.3
B_CELL_NAIVE_39
53.2
B_CELL_NAIVE_40
53.2
B_CELL_NAIVE_41
53.1
B_CELL_NAIVE_42
53.0
B_CELL_NAIVE_43
53.0
B_CELL_NAIVE_44
52.9
B_CELL_NAIVE_45
52.3
B_CELL_NAIVE_46
52.2
B_CELL_NAIVE_47
51.9
B_CELL_NAIVE_48
51.9
B_CELL_NAIVE_49
51.8
B_CELL_NAIVE_50
51.3
B_CELL_NAIVE_51
51.1
B_CELL_NAIVE_52
50.4
B_CELL_NAIVE_53
49.9
B_CELL_NAIVE_54
49.9
B_CELL_NAIVE_55
49.7
B_CELL_NAIVE_56
49.7
B_CELL_NAIVE_57
49.5
B_CELL_NAIVE_58
49.5
B_CELL_NAIVE_59
49.4
B_CELL_NAIVE_60
49.2
B_CELL_NAIVE_61
48.9
B_CELL_NAIVE_62
48.8
B_CELL_NAIVE_63
48.5
B_CELL_NAIVE_64
48.5
B_CELL_NAIVE_65
47.6
B_CELL_NAIVE_66
47.1
B_CELL_NAIVE_67
47.1
B_CELL_NAIVE_68
46.9
B_CELL_NAIVE_69
46.4
B_CELL_NAIVE_70
46.2
B_CELL_NAIVE_71
45.9
B_CELL_NAIVE_72
45.2
B_CELL_NAIVE_73
45.1
B_CELL_NAIVE_74
45.1
B_CELL_NAIVE_75
44.9
B_CELL_NAIVE_76
44.8
B_CELL_NAIVE_77
44.6
B_CELL_NAIVE_78
44.6
B_CELL_NAIVE_79
44.3
B_CELL_NAIVE_80
44.1
B_CELL_NAIVE_81
43.0
B_CELL_NAIVE_82
42.9
B_CELL_NAIVE_83
42.2
B_CELL_NAIVE_84
40.9
B_CELL_NAIVE_85
40.9
B_CELL_NAIVE_86
40.7
B_CELL_NAIVE_87
39.6
B_CELL_NAIVE_88
38.1
B_CELL_NAIVE_89
38.1
B_CELL_NAIVE_90
37.0
B_CELL_NAIVE_91
34.6
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