A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
8.0
nTPM
Monaco:
27.4
nTPM
Schmiedel:
17.0
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
8.0
HPA sample
nTPM
Classical monocyte nTPM: 2.9
Samples: 6
Max nTPM: 4.9
Min nTPM: 1.7
P10809_1003
1.9
P10809_1020
1.7
P10809_1039
3.6
P10809_1058
4.9
P10809_1080
2.5
P10809_1107
2.7
Intermediate monocyte nTPM: 8.1
Samples: 6
Max nTPM: 18.3
Min nTPM: 2.6
P10809_1004
6.7
P10809_1023
3.3
P10809_1042
9.3
P10809_1061
18.3
P10809_1081
8.2
P10809_1108
2.6
Non-classical monocyte nTPM: 3.2
Samples: 5
Max nTPM: 5.5
Min nTPM: 0.0
P10809_1005
2.5
P10809_1053
5.5
P10809_1072
0.0
P10809_1082
5.4
P10809_1109
2.8
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
27.4
Monaco sample
nTPM
Classical monocyte nTPM: 16.6
Samples: 4
Max nTPM: 21.5
Min nTPM: 9.9
RHH5313_R3680
9.9
RHH5221_R3593
21.5
RHH5250_R3622
21.5
RHH5279_R3651
13.5
Intermediate monocyte nTPM: 27.4
Samples: 4
Max nTPM: 34.1
Min nTPM: 20.3
RHH5314_R3681
20.3
RHH5222_R3594
29.7
RHH5251_R3623
25.5
RHH5280_R3652
34.1
Non-classical monocyte nTPM: 18.0
Samples: 4
Max nTPM: 20.5
Min nTPM: 15.1
RHH5315_R3682
15.1
RHH5223_R3595
19.7
RHH5252_R3624
20.5
RHH5281_R3653
16.8
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
17.0
Schmiedel sample id
TPM
Classical monocyte TPM: 9.7
Samples: 91
Max TPM: 16.3
Min TPM: 5.3
MONOCYTES_1
16.3
MONOCYTES_2
15.1
MONOCYTES_3
14.2
MONOCYTES_4
13.8
MONOCYTES_5
13.8
MONOCYTES_6
13.8
MONOCYTES_7
13.3
MONOCYTES_8
13.2
MONOCYTES_9
13.1
MONOCYTES_10
13.0
MONOCYTES_11
12.5
MONOCYTES_12
12.3
MONOCYTES_13
11.7
MONOCYTES_14
11.7
MONOCYTES_15
11.7
MONOCYTES_16
11.6
MONOCYTES_17
11.5
MONOCYTES_18
11.5
MONOCYTES_19
11.4
MONOCYTES_20
11.3
MONOCYTES_21
11.3
MONOCYTES_22
11.3
MONOCYTES_23
11.2
MONOCYTES_24
11.2
MONOCYTES_25
11.1
MONOCYTES_26
11.0
MONOCYTES_27
11.0
MONOCYTES_28
10.9
MONOCYTES_29
10.8
MONOCYTES_30
10.6
MONOCYTES_31
10.6
MONOCYTES_32
10.6
MONOCYTES_33
10.4
MONOCYTES_34
10.4
MONOCYTES_35
10.3
MONOCYTES_36
10.2
MONOCYTES_37
9.9
MONOCYTES_38
9.9
MONOCYTES_39
9.7
MONOCYTES_40
9.7
MONOCYTES_41
9.5
MONOCYTES_42
9.5
MONOCYTES_43
9.4
MONOCYTES_44
9.4
MONOCYTES_45
9.3
MONOCYTES_46
9.3
MONOCYTES_47
9.2
MONOCYTES_48
9.2
MONOCYTES_49
9.2
MONOCYTES_50
9.2
MONOCYTES_51
9.2
MONOCYTES_52
9.1
MONOCYTES_53
9.1
MONOCYTES_54
9.0
MONOCYTES_55
8.9
MONOCYTES_56
8.9
MONOCYTES_57
8.9
MONOCYTES_58
8.8
MONOCYTES_59
8.8
MONOCYTES_60
8.8
MONOCYTES_61
8.7
MONOCYTES_62
8.6
MONOCYTES_63
8.5
MONOCYTES_64
8.5
MONOCYTES_65
8.4
MONOCYTES_66
8.2
MONOCYTES_67
8.2
MONOCYTES_68
8.1
MONOCYTES_69
8.0
MONOCYTES_70
7.9
MONOCYTES_71
7.9
MONOCYTES_72
7.8
MONOCYTES_73
7.7
MONOCYTES_74
7.7
MONOCYTES_75
7.6
MONOCYTES_76
7.5
MONOCYTES_77
7.5
MONOCYTES_78
7.5
MONOCYTES_79
7.4
MONOCYTES_80
7.4
MONOCYTES_81
7.2
MONOCYTES_82
7.1
MONOCYTES_83
7.1
MONOCYTES_84
7.0
MONOCYTES_85
6.6
MONOCYTES_86
6.4
MONOCYTES_87
6.4
MONOCYTES_88
6.4
MONOCYTES_89
6.0
MONOCYTES_90
5.7
MONOCYTES_91
5.3
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Non-classical monocyte TPM: 17.0
Samples: 90
Max TPM: 38.7
Min TPM: 6.8
M2_1
38.7
M2_2
30.0
M2_3
29.2
M2_4
27.6
M2_5
27.4
M2_6
26.6
M2_7
25.8
M2_8
25.8
M2_9
24.5
M2_10
23.9
M2_11
23.8
M2_12
23.8
M2_13
23.6
M2_14
23.0
M2_15
22.5
M2_16
21.6
M2_17
21.6
M2_18
21.5
M2_19
21.2
M2_20
21.1
M2_21
20.7
M2_22
20.6
M2_23
20.3
M2_24
20.2
M2_25
20.1
M2_26
19.7
M2_27
19.6
M2_28
19.3
M2_29
19.0
M2_30
18.9
M2_31
18.8
M2_32
18.6
M2_33
18.6
M2_34
18.4
M2_35
18.1
M2_36
18.0
M2_37
18.0
M2_38
17.8
M2_39
17.6
M2_40
17.6
M2_41
17.5
M2_42
17.3
M2_43
16.9
M2_44
16.9
M2_45
16.8
M2_46
16.7
M2_47
16.7
M2_48
16.6
M2_49
16.3
M2_50
16.1
M2_51
15.8
M2_52
15.7
M2_53
15.2
M2_54
14.8
M2_55
14.5
M2_56
14.4
M2_57
14.2
M2_58
14.2
M2_59
14.1
M2_60
13.9
M2_61
13.5
M2_62
13.5
M2_63
13.4
M2_64
13.2
M2_65
13.1
M2_66
13.1
M2_67
13.1
M2_68
12.9
M2_69
11.9
M2_70
11.9
M2_71
11.7
M2_72
11.5
M2_73
11.4
M2_74
11.4
M2_75
11.3
M2_76
11.2
M2_77
11.1
M2_78
10.9
M2_79
10.7
M2_80
10.7
M2_81
10.7
M2_82
10.5
M2_83
10.0
M2_84
10.0
M2_85
9.9
M2_86
9.4
M2_87
8.6
M2_88
8.4
M2_89
8.3
M2_90
6.8
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