A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
7.7
nTPM
Monaco:
42.9
nTPM
Schmiedel:
20.8
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
7.7
HPA sample
nTPM
NK-cell nTPM: 7.7
Samples: 6
Max nTPM: 14.5
Min nTPM: 4.5
P10809_1013
6.7
P10809_1033
5.7
P10809_1052
4.5
P10809_1071
14.5
P10809_1093
9.0
P10809_1103
5.8
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
42.9
Monaco sample
nTPM
NK-cell nTPM: 43.0
Samples: 4
Max nTPM: 57.0
Min nTPM: 22.2
RHH5316_R3683
39.2
RHH5224_R3596
22.2
RHH5253_R3625
53.4
RHH5282_R3654
57.0
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
20.8
Schmiedel sample id
TPM
NK-cell TPM: 20.8
Samples: 90
Max TPM: 43.7
Min TPM: 9.9
NK_1
43.7
NK_2
34.4
NK_3
33.1
NK_4
31.5
NK_5
31.0
NK_6
30.9
NK_7
30.4
NK_8
27.8
NK_9
26.4
NK_10
26.0
NK_11
25.9
NK_12
25.8
NK_13
25.8
NK_14
25.4
NK_15
25.4
NK_16
25.0
NK_17
24.6
NK_18
24.4
NK_19
24.1
NK_20
23.7
NK_21
23.5
NK_22
23.3
NK_23
23.3
NK_24
23.2
NK_25
23.2
NK_26
23.1
NK_27
23.1
NK_28
23.0
NK_29
22.9
NK_30
22.8
NK_31
22.8
NK_32
22.8
NK_33
22.4
NK_34
22.3
NK_35
22.2
NK_36
22.1
NK_37
22.0
NK_38
22.0
NK_39
21.7
NK_40
21.4
NK_41
21.3
NK_42
21.3
NK_43
21.2
NK_44
21.1
NK_45
20.7
NK_46
20.7
NK_47
20.6
NK_48
20.4
NK_49
20.1
NK_50
20.0
NK_51
19.0
NK_52
18.2
NK_53
18.2
NK_54
18.2
NK_55
18.1
NK_56
18.0
NK_57
18.0
NK_58
17.9
NK_59
17.9
NK_60
17.7
NK_61
17.6
NK_62
17.5
NK_63
17.3
NK_64
17.1
NK_65
16.6
NK_66
16.6
NK_67
16.5
NK_68
16.3
NK_69
16.2
NK_70
16.2
NK_71
16.2
NK_72
16.1
NK_73
16.1
NK_74
15.9
NK_75
15.8
NK_76
15.8
NK_77
15.8
NK_78
15.6
NK_79
15.5
NK_80
15.5
NK_81
15.3
NK_82
15.0
NK_83
14.5
NK_84
14.3
NK_85
14.0
NK_86
13.9
NK_87
13.4
NK_88
13.2
NK_89
13.2
NK_90
9.9
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