A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
3.6
nTPM
Monaco:
35.9
nTPM
Schmiedel:
16.3
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
3.6
HPA sample
nTPM
Classical monocyte nTPM: 2.4
Samples: 6
Max nTPM: 3.0
Min nTPM: 2.1
P10809_1003
2.8
P10809_1020
2.4
P10809_1039
2.1
P10809_1058
3.0
P10809_1080
2.3
P10809_1107
2.1
Intermediate monocyte nTPM: 1.7
Samples: 6
Max nTPM: 2.5
Min nTPM: 0.2
P10809_1004
1.6
P10809_1023
0.2
P10809_1042
2.2
P10809_1061
1.9
P10809_1081
2.5
P10809_1108
1.6
Non-classical monocyte nTPM: 3.6
Samples: 5
Max nTPM: 10.1
Min nTPM: 0.8
P10809_1005
1.3
P10809_1053
1.6
P10809_1072
10.1
P10809_1082
4.0
P10809_1109
0.8
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
35.9
Monaco sample
nTPM
Classical monocyte nTPM: 34.4
Samples: 4
Max nTPM: 47.5
Min nTPM: 28.0
RHH5313_R3680
28.5
RHH5221_R3593
28.0
RHH5250_R3622
47.5
RHH5279_R3651
33.7
Intermediate monocyte nTPM: 23.5
Samples: 4
Max nTPM: 31.8
Min nTPM: 9.6
RHH5314_R3681
22.2
RHH5222_R3594
9.6
RHH5251_R3623
31.8
RHH5280_R3652
30.2
Non-classical monocyte nTPM: 35.9
Samples: 4
Max nTPM: 48.2
Min nTPM: 22.9
RHH5315_R3682
22.9
RHH5223_R3595
25.9
RHH5252_R3624
48.2
RHH5281_R3653
46.6
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
16.3
Schmiedel sample id
TPM
Classical monocyte TPM: 13.1
Samples: 91
Max TPM: 17.7
Min TPM: 8.7
MONOCYTES_1
17.7
MONOCYTES_2
17.0
MONOCYTES_3
16.8
MONOCYTES_4
16.7
MONOCYTES_5
16.4
MONOCYTES_6
16.2
MONOCYTES_7
15.7
MONOCYTES_8
15.7
MONOCYTES_9
15.5
MONOCYTES_10
15.4
MONOCYTES_11
15.3
MONOCYTES_12
15.2
MONOCYTES_13
15.2
MONOCYTES_14
15.2
MONOCYTES_15
15.1
MONOCYTES_16
15.1
MONOCYTES_17
15.0
MONOCYTES_18
15.0
MONOCYTES_19
14.9
MONOCYTES_20
14.5
MONOCYTES_21
14.5
MONOCYTES_22
14.4
MONOCYTES_23
14.4
MONOCYTES_24
14.4
MONOCYTES_25
14.3
MONOCYTES_26
14.3
MONOCYTES_27
14.2
MONOCYTES_28
14.1
MONOCYTES_29
14.0
MONOCYTES_30
14.0
MONOCYTES_31
13.9
MONOCYTES_32
13.9
MONOCYTES_33
13.9
MONOCYTES_34
13.9
MONOCYTES_35
13.7
MONOCYTES_36
13.6
MONOCYTES_37
13.6
MONOCYTES_38
13.5
MONOCYTES_39
13.4
MONOCYTES_40
13.3
MONOCYTES_41
13.3
MONOCYTES_42
13.3
MONOCYTES_43
13.1
MONOCYTES_44
13.0
MONOCYTES_45
13.0
MONOCYTES_46
12.9
MONOCYTES_47
12.8
MONOCYTES_48
12.8
MONOCYTES_49
12.7
MONOCYTES_50
12.7
MONOCYTES_51
12.5
MONOCYTES_52
12.3
MONOCYTES_53
12.3
MONOCYTES_54
12.3
MONOCYTES_55
12.2
MONOCYTES_56
12.2
MONOCYTES_57
12.2
MONOCYTES_58
12.1
MONOCYTES_59
12.1
MONOCYTES_60
12.1
MONOCYTES_61
12.1
MONOCYTES_62
12.0
MONOCYTES_63
11.9
MONOCYTES_64
11.9
MONOCYTES_65
11.9
MONOCYTES_66
11.9
MONOCYTES_67
11.8
MONOCYTES_68
11.8
MONOCYTES_69
11.7
MONOCYTES_70
11.7
MONOCYTES_71
11.6
MONOCYTES_72
11.6
MONOCYTES_73
11.5
MONOCYTES_74
11.5
MONOCYTES_75
11.5
MONOCYTES_76
11.5
MONOCYTES_77
11.4
MONOCYTES_78
11.3
MONOCYTES_79
11.1
MONOCYTES_80
11.0
MONOCYTES_81
10.8
MONOCYTES_82
10.7
MONOCYTES_83
10.6
MONOCYTES_84
10.5
MONOCYTES_85
10.4
MONOCYTES_86
10.4
MONOCYTES_87
10.4
MONOCYTES_88
10.3
MONOCYTES_89
9.3
MONOCYTES_90
9.1
MONOCYTES_91
8.7
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Non-classical monocyte TPM: 16.3
Samples: 90
Max TPM: 26.4
Min TPM: 9.2
M2_1
26.4
M2_2
23.7
M2_3
23.3
M2_4
22.7
M2_5
21.6
M2_6
21.5
M2_7
21.4
M2_8
21.4
M2_9
21.4
M2_10
20.8
M2_11
20.3
M2_12
19.9
M2_13
19.8
M2_14
19.5
M2_15
19.4
M2_16
19.4
M2_17
19.1
M2_18
18.9
M2_19
18.9
M2_20
18.7
M2_21
18.4
M2_22
18.2
M2_23
18.2
M2_24
18.1
M2_25
18.0
M2_26
17.7
M2_27
17.5
M2_28
17.4
M2_29
17.4
M2_30
17.3
M2_31
17.2
M2_32
17.1
M2_33
17.1
M2_34
17.1
M2_35
17.1
M2_36
17.1
M2_37
16.8
M2_38
16.8
M2_39
16.8
M2_40
16.5
M2_41
16.4
M2_42
16.4
M2_43
16.4
M2_44
16.3
M2_45
16.1
M2_46
16.1
M2_47
16.1
M2_48
16.1
M2_49
15.8
M2_50
15.6
M2_51
15.5
M2_52
15.3
M2_53
15.2
M2_54
15.1
M2_55
15.0
M2_56
15.0
M2_57
14.9
M2_58
14.9
M2_59
14.8
M2_60
14.7
M2_61
14.7
M2_62
14.7
M2_63
14.6
M2_64
14.3
M2_65
14.3
M2_66
14.2
M2_67
13.9
M2_68
13.9
M2_69
13.7
M2_70
13.7
M2_71
13.6
M2_72
13.6
M2_73
13.5
M2_74
13.2
M2_75
13.1
M2_76
13.1
M2_77
13.0
M2_78
12.9
M2_79
12.8
M2_80
12.8
M2_81
12.7
M2_82
12.7
M2_83
12.4
M2_84
12.3
M2_85
11.7
M2_86
11.2
M2_87
11.0
M2_88
10.7
M2_89
10.4
M2_90
9.2
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