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  • DLGAP4
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:52.5 nTPM
HPA Brain:130.6 nTPM
GTEx:52.5 nTPM
FANTOM5:134.4 Scaled Tags Per Million
Pig:68.0 nTPM
Mouse:117.2 nTPM
Allen mouse:13.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

130.6
Sample id Sample description nTPM
Amygdala
nTPM: 92.2
2814 Male, age 76, right hemisphere 117.0
2517 Female, age 94, left hemisphere 102.6
1987 Female, age 91, left hemisphere 85.6
2514 Male, age 75, right hemisphere 78.4
2695 Female, age 67, right hemisphere 77.2
Basal amygdala
nTPM: 130.6
2243 Female, age 91, right hemisphere 161.1
2685 Female, age 94, left hemisphere 143.0
2827 Female, age 67, right hemisphere 141.1
2110 Male, age 80, left hemisphere 119.9
2609 Male, age 75, right hemisphere 109.6
1955 Male, age 76, both hemispheres 108.9
Central amygdala
nTPM: 110.3
2826 Female, age 94, left hemisphere 130.0
2239 Male, age 80, left hemisphere 124.6
1905 Male, age 76, both hemispheres 112.1
2701 Female, age 91, right hemisphere 94.9
2515 Male, age 75, right hemisphere 90.0
Corticomedial amygdala
nTPM: 123.5
2535 Female, age 67, right hemisphere 155.6
2829 Male, age 80, left hemisphere 141.1
2242 Female, age 91, right hemisphere 138.9
2240 Male, age 76, both hemispheres 110.0
2429 Female, age 94, left hemisphere 105.5
2428 Male, age 75, right hemisphere 90.2
Lateral amygdala
nTPM: 103.1
2534 Female, age 94, left hemisphere 127.9
2256 Male, age 80, left hemisphere 112.6
2255 Female, age 91, right hemisphere 111.0
2830 Female, age 67, right hemisphere 98.6
1883 Male, age 76, both hemispheres 93.9
2516 Male, age 75, right hemisphere 74.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

52.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 52.5
Samples: 181

Max nTPM: 105.5
Min nTPM: 22.0
Std nTPM: 15.9
Median nTPM: 51.4
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 105.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 101.0
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 99.2
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 91.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 83.2
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 82.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 82.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 81.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 80.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 80.5
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 80.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 79.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 79.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 79.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 78.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 77.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 77.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 77.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 76.4
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 74.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 73.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 73.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 72.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 72.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 70.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 70.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 69.9
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 68.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 67.6
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 67.1
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 66.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 66.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 66.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 65.7
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 65.6
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 65.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 62.5
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 62.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 62.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 62.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 62.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 61.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 61.4
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 60.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 60.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 60.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 60.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 59.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 59.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 59.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 58.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 58.6
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 58.6
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 58.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 58.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 58.1
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 57.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 57.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 57.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 57.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 57.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 57.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 56.4
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 56.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 56.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 56.2
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 55.1
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 55.0
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 55.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 54.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 54.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 54.6
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 54.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 54.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 54.2
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 54.1
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 54.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 53.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 53.5
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 53.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 53.0
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 52.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 52.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 52.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 52.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 52.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 51.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 51.7
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 51.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 51.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 51.4
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 51.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 50.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 50.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 50.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 50.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 50.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 50.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 50.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 49.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 49.7
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 49.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 49.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 49.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 48.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 48.4
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 48.3
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 48.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 48.2
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 47.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 47.7
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 47.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 47.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 47.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 47.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 47.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 46.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 46.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 46.6
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 46.5
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 46.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 46.1
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 46.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 45.4
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 45.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 44.6
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 43.5
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 42.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 42.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 42.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 42.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 42.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 42.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 41.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 41.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 41.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 41.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 41.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 41.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 40.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 40.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 40.1
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 39.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 39.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 39.1
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 38.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 38.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 38.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 38.4
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 38.3
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 38.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 37.4
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 37.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 37.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 36.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 36.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 36.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 35.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 33.5
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 32.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 31.9
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 31.9
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 31.2
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 31.0
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 30.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 30.3
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 30.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 29.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 28.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 28.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 28.2
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 28.2
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 27.6
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 27.5
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 27.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 27.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 26.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 26.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 25.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 23.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 22.0
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

134.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 134.4
FF:10151-102I7 76 years, female 134.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

68.0
Pig sample Sample description nTPM
Amygdala
nTPM: 68.0
Samples: 4

Max nTPM: 87.4
Min nTPM: 51.1
Sample A Female 87.4
Sample B Female 51.1
Sample C Male 66.3
Sample D Male 67.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

117.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 117.2
Samples: 4

Max nTPM: 127.5
Min nTPM: 112.0
Sample A Male 116.6
Sample B Male 112.0
Sample C Female 127.5
Sample D Female 112.7

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

13.6
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 13.6
68499267 Antisense, RP_050118_01_C03, Mouse strain C57BL/6J (56 days, male) 13.6

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