A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
36.5
nTPM
Monaco:
82.5
nTPM
Schmiedel:
149.0
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
36.5
HPA sample
nTPM
NK-cell nTPM: 36.6
Samples: 6
Max nTPM: 56.6
Min nTPM: 21.8
P10809_1013
44.6
P10809_1033
22.7
P10809_1052
21.8
P10809_1071
42.2
P10809_1093
56.6
P10809_1103
31.4
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
82.5
Monaco sample
nTPM
NK-cell nTPM: 82.5
Samples: 4
Max nTPM: 131.4
Min nTPM: 45.2
RHH5316_R3683
45.2
RHH5224_R3596
131.4
RHH5253_R3625
59.4
RHH5282_R3654
94.1
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
149.0
Schmiedel sample id
TPM
NK-cell TPM: 149.0
Samples: 90
Max TPM: 311.7
Min TPM: 108.7
NK_1
311.7
NK_2
295.4
NK_3
225.3
NK_4
218.3
NK_5
210.4
NK_6
203.7
NK_7
197.1
NK_8
192.1
NK_9
191.2
NK_10
182.5
NK_11
179.6
NK_12
176.3
NK_13
174.6
NK_14
171.2
NK_15
170.7
NK_16
169.4
NK_17
167.8
NK_18
167.2
NK_19
166.6
NK_20
164.8
NK_21
163.5
NK_22
163.5
NK_23
159.3
NK_24
158.8
NK_25
158.2
NK_26
156.6
NK_27
156.6
NK_28
155.1
NK_29
152.9
NK_30
152.4
NK_31
151.8
NK_32
150.2
NK_33
149.8
NK_34
149.6
NK_35
149.2
NK_36
146.8
NK_37
145.4
NK_38
145.2
NK_39
145.1
NK_40
144.5
NK_41
144.0
NK_42
142.8
NK_43
142.4
NK_44
139.7
NK_45
139.7
NK_46
139.6
NK_47
139.3
NK_48
138.4
NK_49
138.0
NK_50
136.9
NK_51
135.9
NK_52
135.8
NK_53
134.9
NK_54
134.0
NK_55
133.8
NK_56
133.7
NK_57
132.0
NK_58
132.0
NK_59
131.8
NK_60
130.9
NK_61
130.6
NK_62
130.0
NK_63
129.9
NK_64
129.8
NK_65
129.8
NK_66
129.6
NK_67
128.7
NK_68
128.3
NK_69
128.0
NK_70
127.0
NK_71
126.7
NK_72
124.8
NK_73
124.8
NK_74
124.6
NK_75
124.5
NK_76
122.0
NK_77
122.0
NK_78
121.3
NK_79
120.8
NK_80
119.9
NK_81
119.4
NK_82
119.3
NK_83
119.2
NK_84
119.1
NK_85
117.9
NK_86
117.6
NK_87
116.9
NK_88
114.7
NK_89
109.1
NK_90
108.7
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