A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
36.3
nTPM
Monaco:
79.3
nTPM
Schmiedel:
176.3
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
36.3
HPA sample
nTPM
Classical monocyte nTPM: 22.5
Samples: 6
Max nTPM: 25.0
Min nTPM: 20.9
P10809_1003
21.2
P10809_1020
21.6
P10809_1039
25.0
P10809_1058
20.9
P10809_1080
23.7
P10809_1107
22.3
Intermediate monocyte nTPM: 27.0
Samples: 6
Max nTPM: 34.2
Min nTPM: 22.9
P10809_1004
22.9
P10809_1023
26.4
P10809_1042
25.6
P10809_1061
34.2
P10809_1081
24.6
P10809_1108
28.2
Non-classical monocyte nTPM: 36.3
Samples: 5
Max nTPM: 60.6
Min nTPM: 25.8
P10809_1005
25.8
P10809_1053
28.3
P10809_1072
60.6
P10809_1082
31.8
P10809_1109
35.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
79.3
Monaco sample
nTPM
Classical monocyte nTPM: 65.9
Samples: 4
Max nTPM: 90.1
Min nTPM: 44.7
RHH5313_R3680
44.7
RHH5221_R3593
76.1
RHH5250_R3622
90.1
RHH5279_R3651
52.6
Intermediate monocyte nTPM: 64.9
Samples: 4
Max nTPM: 79.3
Min nTPM: 47.9
RHH5314_R3681
47.9
RHH5222_R3594
79.3
RHH5251_R3623
73.6
RHH5280_R3652
58.9
Non-classical monocyte nTPM: 79.3
Samples: 4
Max nTPM: 125.5
Min nTPM: 60.0
RHH5315_R3682
67.8
RHH5223_R3595
125.5
RHH5252_R3624
63.8
RHH5281_R3653
60.0
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
176.3
Schmiedel sample id
TPM
Classical monocyte TPM: 112.0
Samples: 91
Max TPM: 161.8
Min TPM: 79.4
MONOCYTES_1
161.8
MONOCYTES_2
154.7
MONOCYTES_3
153.3
MONOCYTES_4
148.1
MONOCYTES_5
147.7
MONOCYTES_6
147.5
MONOCYTES_7
142.0
MONOCYTES_8
141.7
MONOCYTES_9
139.1
MONOCYTES_10
136.4
MONOCYTES_11
135.7
MONOCYTES_12
135.1
MONOCYTES_13
134.4
MONOCYTES_14
132.1
MONOCYTES_15
131.7
MONOCYTES_16
130.4
MONOCYTES_17
130.4
MONOCYTES_18
130.2
MONOCYTES_19
126.8
MONOCYTES_20
126.3
MONOCYTES_21
126.1
MONOCYTES_22
123.9
MONOCYTES_23
122.5
MONOCYTES_24
122.3
MONOCYTES_25
121.8
MONOCYTES_26
121.1
MONOCYTES_27
120.3
MONOCYTES_28
118.7
MONOCYTES_29
118.0
MONOCYTES_30
117.1
MONOCYTES_31
116.9
MONOCYTES_32
116.5
MONOCYTES_33
116.4
MONOCYTES_34
116.3
MONOCYTES_35
115.9
MONOCYTES_36
115.2
MONOCYTES_37
113.6
MONOCYTES_38
113.1
MONOCYTES_39
112.8
MONOCYTES_40
112.5
MONOCYTES_41
112.4
MONOCYTES_42
109.8
MONOCYTES_43
109.8
MONOCYTES_44
109.6
MONOCYTES_45
107.0
MONOCYTES_46
106.0
MONOCYTES_47
105.9
MONOCYTES_48
105.8
MONOCYTES_49
104.7
MONOCYTES_50
104.6
MONOCYTES_51
104.6
MONOCYTES_52
104.4
MONOCYTES_53
104.3
MONOCYTES_54
104.2
MONOCYTES_55
104.0
MONOCYTES_56
104.0
MONOCYTES_57
103.7
MONOCYTES_58
103.4
MONOCYTES_59
103.1
MONOCYTES_60
102.7
MONOCYTES_61
102.3
MONOCYTES_62
102.2
MONOCYTES_63
102.2
MONOCYTES_64
101.2
MONOCYTES_65
100.8
MONOCYTES_66
100.6
MONOCYTES_67
100.1
MONOCYTES_68
99.9
MONOCYTES_69
99.9
MONOCYTES_70
99.6
MONOCYTES_71
98.0
MONOCYTES_72
97.6
MONOCYTES_73
97.2
MONOCYTES_74
97.1
MONOCYTES_75
96.7
MONOCYTES_76
95.7
MONOCYTES_77
94.0
MONOCYTES_78
93.0
MONOCYTES_79
92.7
MONOCYTES_80
92.7
MONOCYTES_81
92.4
MONOCYTES_82
90.8
MONOCYTES_83
90.6
MONOCYTES_84
90.5
MONOCYTES_85
90.4
MONOCYTES_86
89.6
MONOCYTES_87
89.5
MONOCYTES_88
87.1
MONOCYTES_89
85.4
MONOCYTES_90
83.0
MONOCYTES_91
79.4
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Non-classical monocyte TPM: 176.3
Samples: 90
Max TPM: 252.6
Min TPM: 89.2
M2_1
252.6
M2_2
251.8
M2_3
249.8
M2_4
242.6
M2_5
228.1
M2_6
226.7
M2_7
226.5
M2_8
224.0
M2_9
217.4
M2_10
216.5
M2_11
215.6
M2_12
215.4
M2_13
215.1
M2_14
207.5
M2_15
207.0
M2_16
203.7
M2_17
203.0
M2_18
202.1
M2_19
201.7
M2_20
198.0
M2_21
197.1
M2_22
196.4
M2_23
195.0
M2_24
193.8
M2_25
193.8
M2_26
192.8
M2_27
188.2
M2_28
186.6
M2_29
186.0
M2_30
184.1
M2_31
183.6
M2_32
183.1
M2_33
181.6
M2_34
181.6
M2_35
180.1
M2_36
179.6
M2_37
178.8
M2_38
178.2
M2_39
177.9
M2_40
177.5
M2_41
177.5
M2_42
177.4
M2_43
177.4
M2_44
176.6
M2_45
176.2
M2_46
175.3
M2_47
174.9
M2_48
172.0
M2_49
169.8
M2_50
168.4
M2_51
166.5
M2_52
165.7
M2_53
165.3
M2_54
164.6
M2_55
164.5
M2_56
164.3
M2_57
164.0
M2_58
162.9
M2_59
162.4
M2_60
162.2
M2_61
162.0
M2_62
161.4
M2_63
159.9
M2_64
157.3
M2_65
155.5
M2_66
155.1
M2_67
155.0
M2_68
154.0
M2_69
153.6
M2_70
152.9
M2_71
152.0
M2_72
151.4
M2_73
150.2
M2_74
149.5
M2_75
148.3
M2_76
148.1
M2_77
147.4
M2_78
145.7
M2_79
143.0
M2_80
142.5
M2_81
140.8
M2_82
140.2
M2_83
138.9
M2_84
138.0
M2_85
137.4
M2_86
137.2
M2_87
133.0
M2_88
131.7
M2_89
129.1
M2_90
89.2
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