A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
188.5
nTPM
Monaco:
585.6
nTPM
Schmiedel:
163.7
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
188.5
HPA sample
nTPM
Memory B-cell nTPM: 142.1
Samples: 6
Max nTPM: 256.8
Min nTPM: 108.5
P10809_1017
119.0
P10809_1025
121.8
P10809_1044
256.8
P10809_1063
137.3
P10809_1092
108.5
P10809_1105
109.4
Naive B-cell nTPM: 188.5
Samples: 6
Max nTPM: 238.3
Min nTPM: 127.6
P10809_1011
169.8
P10809_1029
195.4
P10809_1048
127.6
P10809_1067
238.3
P10809_1091
205.6
P10809_1104
194.2
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
585.6
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 481.0
Samples: 4
Max nTPM: 604.1
Min nTPM: 392.5
RHH5310_R3677
437.9
RHH5218_R3590
489.7
RHH5247_R3619
604.1
RHH5276_R3648
392.5
Naive B-cell nTPM: 585.6
Samples: 4
Max nTPM: 790.2
Min nTPM: 486.2
RHH5308_R3675
486.2
RHH5216_R3588
487.5
RHH5245_R3617
790.2
RHH5274_R3646
578.6
Non-switched memory B-cell nTPM: 257.9
Samples: 4
Max nTPM: 313.2
Min nTPM: 223.5
RHH5309_R3676
232.8
RHH5217_R3589
262.0
RHH5246_R3618
313.2
RHH5275_R3647
223.5
Plasmablast nTPM: 423.5
Samples: 4
Max nTPM: 531.2
Min nTPM: 363.7
RHH5312_R3679
531.2
RHH5220_R3592
363.7
RHH5249_R3621
378.9
RHH5278_R3650
420.1
Switched memory B-cell nTPM: 438.0
Samples: 4
Max nTPM: 617.8
Min nTPM: 356.2
RHH5311_R3678
410.1
RHH5219_R3591
367.9
RHH5248_R3620
617.8
RHH5277_R3649
356.2
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
163.7
Schmiedel sample id
TPM
Naive B-cell TPM: 163.7
Samples: 91
Max TPM: 220.0
Min TPM: 107.9
B_CELL_NAIVE_1
220.0
B_CELL_NAIVE_2
216.4
B_CELL_NAIVE_3
215.6
B_CELL_NAIVE_4
210.9
B_CELL_NAIVE_5
199.9
B_CELL_NAIVE_6
197.7
B_CELL_NAIVE_7
197.3
B_CELL_NAIVE_8
194.3
B_CELL_NAIVE_9
193.6
B_CELL_NAIVE_10
189.3
B_CELL_NAIVE_11
189.1
B_CELL_NAIVE_12
188.2
B_CELL_NAIVE_13
187.1
B_CELL_NAIVE_14
185.4
B_CELL_NAIVE_15
185.0
B_CELL_NAIVE_16
185.0
B_CELL_NAIVE_17
180.7
B_CELL_NAIVE_18
179.4
B_CELL_NAIVE_19
179.2
B_CELL_NAIVE_20
178.8
B_CELL_NAIVE_21
177.5
B_CELL_NAIVE_22
177.2
B_CELL_NAIVE_23
176.6
B_CELL_NAIVE_24
175.4
B_CELL_NAIVE_25
174.5
B_CELL_NAIVE_26
173.9
B_CELL_NAIVE_27
173.1
B_CELL_NAIVE_28
172.5
B_CELL_NAIVE_29
172.2
B_CELL_NAIVE_30
171.4
B_CELL_NAIVE_31
171.3
B_CELL_NAIVE_32
170.8
B_CELL_NAIVE_33
170.1
B_CELL_NAIVE_34
169.0
B_CELL_NAIVE_35
168.8
B_CELL_NAIVE_36
168.6
B_CELL_NAIVE_37
168.4
B_CELL_NAIVE_38
168.2
B_CELL_NAIVE_39
167.2
B_CELL_NAIVE_40
166.7
B_CELL_NAIVE_41
166.0
B_CELL_NAIVE_42
165.9
B_CELL_NAIVE_43
165.0
B_CELL_NAIVE_44
164.9
B_CELL_NAIVE_45
164.4
B_CELL_NAIVE_46
164.1
B_CELL_NAIVE_47
164.0
B_CELL_NAIVE_48
162.9
B_CELL_NAIVE_49
160.5
B_CELL_NAIVE_50
160.5
B_CELL_NAIVE_51
160.2
B_CELL_NAIVE_52
160.0
B_CELL_NAIVE_53
158.2
B_CELL_NAIVE_54
157.1
B_CELL_NAIVE_55
157.0
B_CELL_NAIVE_56
156.1
B_CELL_NAIVE_57
156.1
B_CELL_NAIVE_58
155.3
B_CELL_NAIVE_59
155.2
B_CELL_NAIVE_60
155.1
B_CELL_NAIVE_61
155.1
B_CELL_NAIVE_62
153.6
B_CELL_NAIVE_63
153.6
B_CELL_NAIVE_64
153.3
B_CELL_NAIVE_65
152.9
B_CELL_NAIVE_66
152.0
B_CELL_NAIVE_67
150.9
B_CELL_NAIVE_68
149.3
B_CELL_NAIVE_69
148.2
B_CELL_NAIVE_70
147.6
B_CELL_NAIVE_71
146.4
B_CELL_NAIVE_72
146.1
B_CELL_NAIVE_73
146.0
B_CELL_NAIVE_74
144.5
B_CELL_NAIVE_75
144.1
B_CELL_NAIVE_76
143.7
B_CELL_NAIVE_77
143.6
B_CELL_NAIVE_78
143.2
B_CELL_NAIVE_79
140.5
B_CELL_NAIVE_80
140.3
B_CELL_NAIVE_81
138.1
B_CELL_NAIVE_82
136.9
B_CELL_NAIVE_83
136.8
B_CELL_NAIVE_84
135.2
B_CELL_NAIVE_85
134.5
B_CELL_NAIVE_86
133.7
B_CELL_NAIVE_87
129.0
B_CELL_NAIVE_88
125.9
B_CELL_NAIVE_89
124.4
B_CELL_NAIVE_90
122.0
B_CELL_NAIVE_91
107.9
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