A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
82.7
nTPM
Monaco:
247.9
nTPM
Schmiedel:
49.2
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
82.7
HPA sample
nTPM
Classical monocyte nTPM: 72.2
Samples: 6
Max nTPM: 85.5
Min nTPM: 58.5
P10809_1003
64.9
P10809_1020
85.5
P10809_1039
81.2
P10809_1058
65.0
P10809_1080
77.8
P10809_1107
58.5
Intermediate monocyte nTPM: 82.7
Samples: 6
Max nTPM: 107.3
Min nTPM: 48.1
P10809_1004
71.9
P10809_1023
90.7
P10809_1042
85.2
P10809_1061
107.3
P10809_1081
93.0
P10809_1108
48.1
Non-classical monocyte nTPM: 71.9
Samples: 5
Max nTPM: 85.4
Min nTPM: 48.3
P10809_1005
78.4
P10809_1053
70.3
P10809_1072
85.4
P10809_1082
77.1
P10809_1109
48.3
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
247.9
Monaco sample
nTPM
Classical monocyte nTPM: 234.1
Samples: 4
Max nTPM: 267.9
Min nTPM: 201.4
RHH5313_R3680
201.4
RHH5221_R3593
267.9
RHH5250_R3622
239.0
RHH5279_R3651
228.2
Intermediate monocyte nTPM: 217.9
Samples: 4
Max nTPM: 243.6
Min nTPM: 179.3
RHH5314_R3681
179.3
RHH5222_R3594
243.6
RHH5251_R3623
220.7
RHH5280_R3652
227.9
Non-classical monocyte nTPM: 247.9
Samples: 4
Max nTPM: 286.6
Min nTPM: 212.5
RHH5315_R3682
212.5
RHH5223_R3595
242.2
RHH5252_R3624
286.6
RHH5281_R3653
250.4
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
49.2
Schmiedel sample id
TPM
Classical monocyte TPM: 30.3
Samples: 91
Max TPM: 49.2
Min TPM: 18.5
MONOCYTES_1
49.2
MONOCYTES_2
44.8
MONOCYTES_3
43.4
MONOCYTES_4
42.2
MONOCYTES_5
41.1
MONOCYTES_6
40.4
MONOCYTES_7
39.9
MONOCYTES_8
39.9
MONOCYTES_9
37.7
MONOCYTES_10
37.3
MONOCYTES_11
37.1
MONOCYTES_12
37.0
MONOCYTES_13
36.7
MONOCYTES_14
36.6
MONOCYTES_15
36.0
MONOCYTES_16
35.9
MONOCYTES_17
35.9
MONOCYTES_18
35.8
MONOCYTES_19
35.3
MONOCYTES_20
35.2
MONOCYTES_21
35.0
MONOCYTES_22
34.7
MONOCYTES_23
34.6
MONOCYTES_24
33.9
MONOCYTES_25
33.8
MONOCYTES_26
33.7
MONOCYTES_27
33.4
MONOCYTES_28
33.4
MONOCYTES_29
33.2
MONOCYTES_30
32.8
MONOCYTES_31
32.8
MONOCYTES_32
32.8
MONOCYTES_33
32.8
MONOCYTES_34
32.3
MONOCYTES_35
32.3
MONOCYTES_36
31.5
MONOCYTES_37
31.5
MONOCYTES_38
31.1
MONOCYTES_39
30.9
MONOCYTES_40
30.3
MONOCYTES_41
30.3
MONOCYTES_42
30.3
MONOCYTES_43
30.0
MONOCYTES_44
30.0
MONOCYTES_45
29.9
MONOCYTES_46
29.9
MONOCYTES_47
29.6
MONOCYTES_48
29.1
MONOCYTES_49
29.1
MONOCYTES_50
29.1
MONOCYTES_51
28.9
MONOCYTES_52
28.7
MONOCYTES_53
28.4
MONOCYTES_54
28.4
MONOCYTES_55
28.3
MONOCYTES_56
28.2
MONOCYTES_57
27.7
MONOCYTES_58
27.5
MONOCYTES_59
27.4
MONOCYTES_60
27.0
MONOCYTES_61
26.9
MONOCYTES_62
26.7
MONOCYTES_63
26.6
MONOCYTES_64
26.4
MONOCYTES_65
26.2
MONOCYTES_66
26.1
MONOCYTES_67
25.8
MONOCYTES_68
25.7
MONOCYTES_69
25.5
MONOCYTES_70
25.4
MONOCYTES_71
25.3
MONOCYTES_72
25.3
MONOCYTES_73
25.0
MONOCYTES_74
24.9
MONOCYTES_75
24.7
MONOCYTES_76
24.6
MONOCYTES_77
24.5
MONOCYTES_78
24.4
MONOCYTES_79
24.3
MONOCYTES_80
24.1
MONOCYTES_81
23.4
MONOCYTES_82
22.7
MONOCYTES_83
22.6
MONOCYTES_84
22.5
MONOCYTES_85
22.3
MONOCYTES_86
22.2
MONOCYTES_87
22.0
MONOCYTES_88
20.7
MONOCYTES_89
19.5
MONOCYTES_90
18.9
MONOCYTES_91
18.5
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Non-classical monocyte TPM: 49.2
Samples: 90
Max TPM: 87.2
Min TPM: 33.4
M2_1
87.2
M2_2
81.6
M2_3
74.5
M2_4
72.1
M2_5
69.9
M2_6
64.1
M2_7
63.3
M2_8
60.7
M2_9
59.2
M2_10
59.2
M2_11
58.4
M2_12
58.3
M2_13
58.1
M2_14
57.9
M2_15
57.8
M2_16
56.9
M2_17
56.4
M2_18
56.2
M2_19
56.2
M2_20
56.2
M2_21
56.1
M2_22
55.8
M2_23
55.4
M2_24
54.7
M2_25
54.3
M2_26
53.9
M2_27
53.4
M2_28
53.3
M2_29
53.2
M2_30
52.0
M2_31
51.5
M2_32
51.5
M2_33
51.1
M2_34
50.6
M2_35
50.6
M2_36
50.0
M2_37
49.7
M2_38
49.5
M2_39
49.3
M2_40
49.3
M2_41
49.2
M2_42
49.2
M2_43
48.6
M2_44
48.3
M2_45
48.2
M2_46
48.2
M2_47
48.1
M2_48
47.7
M2_49
47.6
M2_50
47.5
M2_51
47.4
M2_52
47.3
M2_53
46.9
M2_54
46.7
M2_55
46.3
M2_56
45.8
M2_57
45.6
M2_58
45.2
M2_59
44.8
M2_60
44.4
M2_61
44.0
M2_62
44.0
M2_63
43.5
M2_64
43.4
M2_65
43.2
M2_66
42.9
M2_67
42.7
M2_68
42.7
M2_69
42.6
M2_70
42.1
M2_71
41.5
M2_72
41.4
M2_73
41.1
M2_74
40.5
M2_75
40.4
M2_76
38.7
M2_77
38.0
M2_78
38.0
M2_79
37.9
M2_80
36.6
M2_81
36.1
M2_82
36.0
M2_83
35.9
M2_84
35.8
M2_85
35.6
M2_86
35.6
M2_87
35.4
M2_88
34.3
M2_89
33.8
M2_90
33.4
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