A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
9.8
nTPM
Monaco:
54.1
nTPM
Schmiedel:
25.3
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
9.8
HPA sample
nTPM
NK-cell nTPM: 9.9
Samples: 6
Max nTPM: 15.5
Min nTPM: 6.2
P10809_1013
8.9
P10809_1033
10.2
P10809_1052
15.5
P10809_1071
6.2
P10809_1093
7.9
P10809_1103
10.4
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
54.1
Monaco sample
nTPM
NK-cell nTPM: 54.2
Samples: 4
Max nTPM: 67.4
Min nTPM: 44.7
RHH5316_R3683
55.9
RHH5224_R3596
48.6
RHH5253_R3625
67.4
RHH5282_R3654
44.7
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
25.3
Schmiedel sample id
TPM
NK-cell TPM: 25.3
Samples: 90
Max TPM: 41.0
Min TPM: 16.6
NK_1
41.0
NK_2
40.5
NK_3
37.6
NK_4
34.6
NK_5
33.4
NK_6
32.6
NK_7
32.3
NK_8
32.2
NK_9
31.1
NK_10
30.9
NK_11
30.9
NK_12
30.8
NK_13
29.9
NK_14
29.2
NK_15
29.1
NK_16
28.7
NK_17
28.7
NK_18
28.6
NK_19
28.5
NK_20
28.2
NK_21
28.1
NK_22
27.9
NK_23
27.7
NK_24
27.2
NK_25
27.1
NK_26
27.0
NK_27
26.9
NK_28
26.7
NK_29
26.2
NK_30
26.0
NK_31
25.9
NK_32
25.8
NK_33
25.8
NK_34
25.7
NK_35
25.6
NK_36
25.6
NK_37
25.5
NK_38
25.3
NK_39
25.3
NK_40
25.1
NK_41
25.0
NK_42
24.9
NK_43
24.9
NK_44
24.8
NK_45
24.8
NK_46
24.6
NK_47
24.5
NK_48
24.4
NK_49
24.3
NK_50
24.1
NK_51
24.0
NK_52
24.0
NK_53
23.9
NK_54
23.5
NK_55
23.3
NK_56
23.3
NK_57
23.3
NK_58
23.2
NK_59
23.1
NK_60
23.0
NK_61
23.0
NK_62
22.9
NK_63
22.8
NK_64
22.5
NK_65
22.3
NK_66
22.3
NK_67
22.2
NK_68
22.1
NK_69
22.1
NK_70
22.0
NK_71
21.8
NK_72
21.7
NK_73
21.5
NK_74
21.5
NK_75
21.4
NK_76
21.4
NK_77
21.3
NK_78
21.3
NK_79
21.2
NK_80
20.9
NK_81
20.8
NK_82
20.2
NK_83
19.8
NK_84
19.4
NK_85
19.2
NK_86
19.2
NK_87
19.0
NK_88
18.5
NK_89
17.7
NK_90
16.6
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