A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
25.7
nTPM
Monaco:
126.6
nTPM
Schmiedel:
54.7
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
25.7
HPA sample
nTPM
Classical monocyte nTPM: 16.4
Samples: 6
Max nTPM: 36.9
Min nTPM: 9.4
P10809_1003
11.1
P10809_1020
18.8
P10809_1039
36.9
P10809_1058
9.4
P10809_1080
10.9
P10809_1107
11.4
Intermediate monocyte nTPM: 19.0
Samples: 6
Max nTPM: 23.9
Min nTPM: 10.3
P10809_1004
23.6
P10809_1023
23.9
P10809_1042
22.0
P10809_1061
10.3
P10809_1081
10.7
P10809_1108
23.5
Non-classical monocyte nTPM: 25.7
Samples: 5
Max nTPM: 38.4
Min nTPM: 16.7
P10809_1005
38.4
P10809_1053
22.4
P10809_1072
26.9
P10809_1082
16.7
P10809_1109
24.3
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
126.6
Monaco sample
nTPM
Classical monocyte nTPM: 87.7
Samples: 4
Max nTPM: 135.5
Min nTPM: 56.3
RHH5313_R3680
63.8
RHH5221_R3593
135.5
RHH5250_R3622
95.1
RHH5279_R3651
56.3
Intermediate monocyte nTPM: 122.5
Samples: 4
Max nTPM: 194.4
Min nTPM: 87.0
RHH5314_R3681
97.4
RHH5222_R3594
194.4
RHH5251_R3623
111.0
RHH5280_R3652
87.0
Non-classical monocyte nTPM: 126.6
Samples: 4
Max nTPM: 167.4
Min nTPM: 83.4
RHH5315_R3682
121.4
RHH5223_R3595
134.1
RHH5252_R3624
167.4
RHH5281_R3653
83.4
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
54.7
Schmiedel sample id
TPM
Classical monocyte TPM: 25.1
Samples: 91
Max TPM: 34.2
Min TPM: 17.0
MONOCYTES_1
34.2
MONOCYTES_2
33.8
MONOCYTES_3
33.4
MONOCYTES_4
33.4
MONOCYTES_5
33.3
MONOCYTES_6
32.8
MONOCYTES_7
32.0
MONOCYTES_8
31.5
MONOCYTES_9
31.3
MONOCYTES_10
30.9
MONOCYTES_11
30.5
MONOCYTES_12
30.1
MONOCYTES_13
29.9
MONOCYTES_14
29.2
MONOCYTES_15
28.8
MONOCYTES_16
28.8
MONOCYTES_17
28.6
MONOCYTES_18
28.5
MONOCYTES_19
28.2
MONOCYTES_20
28.1
MONOCYTES_21
28.1
MONOCYTES_22
28.0
MONOCYTES_23
27.9
MONOCYTES_24
27.3
MONOCYTES_25
27.2
MONOCYTES_26
27.2
MONOCYTES_27
27.2
MONOCYTES_28
27.1
MONOCYTES_29
26.9
MONOCYTES_30
26.8
MONOCYTES_31
26.7
MONOCYTES_32
26.4
MONOCYTES_33
26.1
MONOCYTES_34
25.9
MONOCYTES_35
25.8
MONOCYTES_36
25.7
MONOCYTES_37
25.7
MONOCYTES_38
25.7
MONOCYTES_39
25.3
MONOCYTES_40
25.0
MONOCYTES_41
24.9
MONOCYTES_42
24.9
MONOCYTES_43
24.9
MONOCYTES_44
24.9
MONOCYTES_45
24.8
MONOCYTES_46
24.8
MONOCYTES_47
24.4
MONOCYTES_48
24.3
MONOCYTES_49
24.2
MONOCYTES_50
24.1
MONOCYTES_51
24.1
MONOCYTES_52
23.8
MONOCYTES_53
23.8
MONOCYTES_54
23.7
MONOCYTES_55
23.7
MONOCYTES_56
23.6
MONOCYTES_57
23.6
MONOCYTES_58
23.6
MONOCYTES_59
23.3
MONOCYTES_60
23.2
MONOCYTES_61
23.1
MONOCYTES_62
23.0
MONOCYTES_63
22.9
MONOCYTES_64
22.9
MONOCYTES_65
22.9
MONOCYTES_66
22.8
MONOCYTES_67
22.8
MONOCYTES_68
22.8
MONOCYTES_69
22.6
MONOCYTES_70
22.5
MONOCYTES_71
22.2
MONOCYTES_72
22.0
MONOCYTES_73
22.0
MONOCYTES_74
21.6
MONOCYTES_75
21.4
MONOCYTES_76
21.3
MONOCYTES_77
21.2
MONOCYTES_78
21.1
MONOCYTES_79
20.9
MONOCYTES_80
20.8
MONOCYTES_81
20.2
MONOCYTES_82
20.2
MONOCYTES_83
19.8
MONOCYTES_84
19.5
MONOCYTES_85
19.2
MONOCYTES_86
19.0
MONOCYTES_87
18.9
MONOCYTES_88
18.8
MONOCYTES_89
18.8
MONOCYTES_90
17.2
MONOCYTES_91
17.0
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Non-classical monocyte TPM: 54.7
Samples: 90
Max TPM: 80.1
Min TPM: 38.2
M2_1
80.1
M2_2
79.8
M2_3
75.3
M2_4
75.2
M2_5
74.6
M2_6
73.2
M2_7
71.0
M2_8
70.4
M2_9
66.1
M2_10
64.5
M2_11
64.3
M2_12
63.9
M2_13
63.1
M2_14
62.9
M2_15
62.7
M2_16
61.7
M2_17
60.0
M2_18
59.5
M2_19
59.5
M2_20
58.9
M2_21
58.7
M2_22
58.5
M2_23
58.4
M2_24
58.1
M2_25
58.1
M2_26
57.7
M2_27
57.7
M2_28
57.6
M2_29
57.4
M2_30
57.0
M2_31
56.7
M2_32
56.7
M2_33
56.7
M2_34
56.5
M2_35
56.0
M2_36
56.0
M2_37
55.9
M2_38
55.7
M2_39
55.3
M2_40
55.1
M2_41
55.1
M2_42
54.8
M2_43
54.4
M2_44
53.9
M2_45
53.7
M2_46
53.7
M2_47
53.1
M2_48
52.5
M2_49
52.5
M2_50
52.3
M2_51
52.3
M2_52
52.1
M2_53
52.0
M2_54
51.7
M2_55
51.6
M2_56
51.4
M2_57
51.2
M2_58
50.8
M2_59
50.7
M2_60
50.2
M2_61
49.9
M2_62
49.4
M2_63
49.2
M2_64
49.0
M2_65
49.0
M2_66
48.8
M2_67
48.7
M2_68
48.5
M2_69
48.4
M2_70
48.1
M2_71
47.4
M2_72
47.2
M2_73
47.0
M2_74
46.9
M2_75
46.8
M2_76
46.5
M2_77
46.5
M2_78
46.4
M2_79
46.3
M2_80
46.0
M2_81
45.9
M2_82
45.6
M2_83
45.0
M2_84
44.9
M2_85
44.1
M2_86
42.5
M2_87
41.8
M2_88
41.0
M2_89
40.4
M2_90
38.2
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