On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
63.7
nTPM
HPA Brain:
185.5
nTPM
GTEx:
63.7
nTPM
FANTOM5:
227.8
Scaled Tags Per Million
Macaque:
313.6
nTPM
Mouse:
316.2
nTPM
Rat:
178.9
nTPM
Pig:
173.9
nTPM
SPINAL CORD - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - SPINAL CORD, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Excitatory (VGLUT1) ETV1+ Z...
c-2
Excitatory (VGLUT2) SST+ GR...
c-3
Excitatory (VGLUT2)
c-4
Excitatory (VGLUT2) SST+ CX...
c-5
Excitatory (VGLUT2) SST+ TA...
c-6
Excitatory (VGLUT2) SST+ CA...
c-7
Excitatory (VGLUT2) SST+
c-8
Excitatory (VGLUT2) CXCL14+
c-9
Excitatory (VGLUT2) SST+
c-10
Inhibitory (GAD1/2) SLC6A5+...
c-11
Inhibitory (GAD1/2) PENK+ E...
c-12
Inhibitory (GAD1/2) SLC6A5+...
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2) CALB1+
c-15
Inhibitory (GAD1/2) SLC6A5+...
c-16
CALB1+ TRH+
c-17
Inhibitory (GAD1/2) SLC6A5+
c-18
Inhibitory (GAD1/2) SLC6A5+...
c-19
Inhibitory (GAD1/2) SLC6A5+...
c-20
Excitatory (VGLUT2) PENK+ T...
c-21
Inhibitory (GAD2) SLC6A5+ N
c-22
Inhibitory (GAD1/2) TAC1+ K...
c-23
Inhibitory (GAD1/2) SLC6A5+...
c-24
Excitatory (VGLUT2) TAC1+
c-25
Excitatory (VGLUT2)
c-26
Inhibitory (GAD1/2) SLC6A5+
c-27
Excitatory (VGLUT2) SST+ CA...
c-28
Inhibitory (GAD1/2) SLC6A5+...
c-29
Unassigned
c-30
Excitatory (VGLUT2) PENK+
c-31
Inhibitory (GAD1/2) PVALB+ ...
c-32
Excitatory (VGLUT2) PENK+ S...
c-33
Excitatory (VGLUT2)
c-34
Excitatory (VGLUT2) SST+ TA...
c-35
Excitatory (VGLUT2)
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - SPINAL CORD, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Oligodendrocytes
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Oligodendrocytes
c-7
Microglia
c-8
Astrocytes (CD44+)
c-9
Astrocytes (CD44+)
c-10
Astrocytes
c-11
Lymphocytes
c-12
Vascular endothelial cells
c-13
Microglia (SPP1+ HIF1A+)
c-14
Ependymal cells
c-15
Oligodendrocyte & OPC doubl
c-16
Pericytes
c-17
Fibroblasts
c-18
Immature oligodendrocytes
c-19
Macrophages
c-20
Myelinating schwann cells
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SPINAL CORD - PROTEINTALKS DB MS
Median intensity
143506
Sample
Intensity
Spinal cord_01
129272
Spinal cord_02
86421
Spinal cord_03
215498
Spinal cord_04
160688
Spinal cord_05
206906
Spinal cord_06
86272
Spinal cord_07
155164
Spinal cord_08
131848
SPINAL CORD - HPA Brain Stereo-seq
SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
185.5
Sample id
Sample description
nTPM
Anterior funiculus (white matter) nTPM: 185.5
2819
Male, age 47, both hemispheres
248.8
2193
Male, age 75, both hemispheres
226.0
2734
Male, age 80, both hemispheres
149.8
2818
Female, age 79, both hemispheres
117.3
Cervical spinal cord, central gray nTPM: 130.0
2194
Female, age 79, both hemispheres
153.6
2816
Male, age 47, midline
141.8
1981
Female, age 72, midline
125.9
2565
Male, age 75, midline
123.8
2048
Male, age 55, midline
104.9
Cervical spinal cord, dorsal horn nTPM: 138.4
2173
Female, age 72, unknown
186.6
2296
Male, age 66, both hemispheres
150.6
2721
Male, age 90, both hemispheres
134.3
2297
Male, age 75, both hemispheres
128.8
2069
Male, age 47, both hemispheres
115.6
1877
Male, age 55, unknown
114.6
Cervical spinal cord, ventral horn nTPM: 134.9
2820
Female, age 79, both hemispheres
175.3
2068
Male, age 55, unknown
174.5
2295
Male, age 66, both hemispheres
129.0
2809
Male, age 90, both hemispheres
117.4
2480
Male, age 75, both hemispheres
107.1
2098
Female, age 72, unknown
105.9
Dorsal funiculus (white matter) nTPM: 171.0
2128
Male, age 75, both hemispheres
257.6
2810
Male, age 90, both hemispheres
186.5
2812
Male, age 66, both hemispheres
178.0
2817
Male, age 47, both hemispheres
124.7
2064
Female, age 79, both hemispheres
108.3
Lateral funiculus (white matter) nTPM: 178.9
2192
Male, age 75, both hemispheres
266.0
2099
Male, age 90, both hemispheres
171.9
2294
Male, age 66, both hemispheres
146.1
2094
Female, age 79, both hemispheres
131.5
SPINAL CORD - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
63.7
GTEx sample id
Sample description
nTPM
Brain - Spinal cord (cervical c-1) Average nTPM: 63.7
Samples: 204
Max nTPM: 149.7
Min nTPM: 8.5
Std nTPM: 29.9
Median nTPM: 61.9
GTEX-1PIIG-0011-R9b-SM-G8OLU
30-39 years, male
149.7
GTEX-15SHU-0011-R9a-SM-GNIOE
40-49 years, female
143.4
GTEX-14JFF-0011-R9b-SM-G9ERJ
60-69 years, male
142.7
GTEX-1GTWX-0011-R9a-SM-ADEH4
60-69 years, male
130.6
GTEX-139UW-0011-R9b-SM-5LZYT
60-69 years, male
125.3
GTEX-1QMI2-0011-R9a-SM-G8ON7
60-69 years, male
123.7
GTEX-1EKGG-0011-R9a-SM-CMKFV
60-69 years, male
120.4
GTEX-WVLH-0011-R9A-SM-H7OHH
50-59 years, male
119.0
GTEX-145LU-0011-R9b-SM-5SI66
50-59 years, male
116.8
GTEX-17EVQ-0011-R9b-SM-79OJY
70-79 years, male
116.6
GTEX-12126-0011-R9b-SM-5BC6P
20-29 years, male
116.3
GTEX-1F6I4-0011-R9a-SM-CMKFU
60-69 years, male
116.0
GTEX-14PJM-0011-R9b-SM-6EU35
50-59 years, female
115.6
GTEX-1JMQJ-0011-R9b-SM-G8OKN
50-59 years, male
109.5
GTEX-1IKJJ-0011-R9a-SM-ARZLI
60-69 years, male
108.4
GTEX-1GZHY-0011-R9a-SM-9WG5R
50-59 years, female
108.2
GTEX-1A32A-0011-R9b-SM-7MGXD
50-59 years, female
108.0
GTEX-13N1W-0011-R9b-SM-5MR4R
70-79 years, male
107.8
GTEX-1F88F-0011-R9b-SM-9WG7L
60-69 years, female
107.4
GTEX-1LG7Y-0011-R9a-SM-G8LMA
50-59 years, male
105.9
GTEX-14ABY-0011-R9a-SM-5PNZK
50-59 years, male
105.1
GTEX-T5JC-0011-R9A-SM-32PLV
20-29 years, male
105.0
GTEX-13OVL-0011-R9a-SM-5P9GX
50-59 years, male
104.9
GTEX-16Z82-0011-R9a-SM-7DUFA
60-69 years, male
104.0
GTEX-QDT8-0011-R9A-SM-CYPRD
30-39 years, female
102.1
GTEX-14BMV-0011-R9b-SM-5ZZUA
50-59 years, male
100.2
GTEX-16GPK-0011-R9a-SM-GPI9P
60-69 years, male
99.3
GTEX-WL46-0011-R9A-SM-3MJFP
50-59 years, male
99.2
GTEX-13FXS-0011-R9a-SM-5K7UI
50-59 years, male
98.5
GTEX-1B8L1-0011-R9b-SM-9WG5U
60-69 years, male
97.2
GTEX-1IL2U-0011-R9a-SM-GPRYC
60-69 years, male
97.2
GTEX-13112-0011-R9b-SM-GHWOV
50-59 years, male
96.1
GTEX-1R9PO-0011-R9a-SM-G8LKP
60-69 years, female
94.1
GTEX-13PLJ-0011-R9b-SM-5O9DV
60-69 years, female
92.4
GTEX-1GZ2Q-0011-R9a-SM-9WG7A
40-49 years, male
92.1
GTEX-11GSO-0011-R9b-SM-GI4VN
60-69 years, male
91.8
GTEX-1H1ZS-0011-R9a-SM-CM2SO
70-79 years, male
91.5
GTEX-14E7W-0011-R9a-SM-62LE6
70-79 years, male
91.3
GTEX-1B933-0011-R9a-SM-79OOR
50-59 years, female
91.1
GTEX-13VXU-0011-R9b-SM-5SI73
50-59 years, male
90.8
GTEX-1GN73-0011-R9a-SM-CKZO5
60-69 years, male
90.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3
60-69 years, male
90.8
GTEX-11NV4-0011-R9a-SM-GHWPP
60-69 years, male
89.9
GTEX-1EWIQ-0011-R9a-SM-ARL8L
70-79 years, female
87.3
GTEX-117YW-0011-R9a-SM-GHWPQ
50-59 years, male
87.2
GTEX-14PJO-0011-R9b-SM-62LE9
60-69 years, male
86.2
GTEX-1EU9M-0011-R9a-SM-9WG61
60-69 years, male
86.0
GTEX-1O9I2-0011-R9b-SM-G8OKW
50-59 years, male
85.2
GTEX-1PPGY-0011-R9a-SM-G8LMR
60-69 years, male
84.2
GTEX-11NUK-0011-R9a-SM-GI4XG
50-59 years, male
83.5
GTEX-15ER7-0011-R9b-SM-6PALF
20-29 years, female
83.2
GTEX-14BIL-0011-R9a-SM-5SI7A
50-59 years, male
82.9
GTEX-1JMPZ-0011-R9a-SM-G8OLH
30-39 years, male
82.5
GTEX-131XW-0011-R9a-SM-5N9EO
50-59 years, female
82.1
GTEX-13RTJ-0011-R9a-SM-5Q5AY
60-69 years, male
81.9
GTEX-1CAMQ-0011-R9a-SM-9WG5Z
40-49 years, male
81.2
GTEX-1JMLX-0011-R9a-SM-EYYXM
50-59 years, male
80.4
GTEX-1LSVX-0011-R9b-SM-G8LL2
60-69 years, male
79.9
GTEX-1C6VQ-0011-R9a-SM-7SB85
50-59 years, male
79.0
GTEX-11ZUS-0011-R9b-SM-5BC76
30-39 years, male
78.7
GTEX-13QIC-0011-R9a-SM-GI4WO
60-69 years, female
77.9
GTEX-1I1GS-0011-R9b-SM-CMKHF
60-69 years, male
77.4
GTEX-1HFI6-0011-R9b-SM-CMKH4
40-49 years, male
76.4
GTEX-111VG-0011-R9b-SM-GHWOB
60-69 years, male
76.2
GTEX-1MCQQ-0011-R9b-SM-G8OKM
60-69 years, male
76.1
GTEX-13G51-0011-R9b-SM-GHWPS
60-69 years, male
75.9
GTEX-1I1CD-0011-R9a-SM-CMKHB
60-69 years, female
75.6
GTEX-1HBPH-0011-R9a-SM-CMKH3
40-49 years, female
75.4
GTEX-147GR-0011-R9a-SM-5S2UY
60-69 years, male
74.3
GTEX-15DYW-0011-R9b-SM-6PALB
60-69 years, female
74.3
GTEX-1RDX4-0011-R9b-SM-G8LMG
50-59 years, female
74.3
GTEX-16XZZ-0011-R9b-SM-7DHKX
60-69 years, male
74.0
GTEX-T6MN-0011-R9A-SM-32QOZ
50-59 years, male
73.4
GTEX-1A8G7-0011-R9b-SM-7IGQH
60-69 years, male
72.4
GTEX-YJ89-0011-R9a-SM-4SOK7
60-69 years, male
71.9
GTEX-1NV8Z-0011-R9b-SM-G8OME
60-69 years, male
71.8
GTEX-1HGF4-0011-R9a-SM-ADEH9
60-69 years, male
71.6
GTEX-131YS-0011-R9b-SM-5EQLY
60-69 years, female
71.3
GTEX-13PVQ-0011-R9b-SM-5LU3B
50-59 years, male
71.3
GTEX-13SLX-0011-R9b-SM-5SI6X
50-59 years, female
71.3
GTEX-14BIN-0011-R9a-SM-5SI76
50-59 years, female
71.3
GTEX-1212Z-0011-R9b-SM-GHWPM
60-69 years, male
71.2
GTEX-1GF9W-0011-R9b-SM-9WG7J
60-69 years, male
71.1
GTEX-13FTY-0011-R9b-SM-5KM2U
40-49 years, female
70.5
GTEX-XMD1-0011-R9A-SM-4AT49
60-69 years, male
70.1
GTEX-117XS-0011-R9b-SM-GHWOG
60-69 years, male
69.1
GTEX-XLM4-0011-R9A-SM-4AT45
60-69 years, male
67.6
GTEX-11ZU8-0011-R9b-SM-GHWOL
60-69 years, male
67.5
GTEX-ZVZQ-0011-R9a-SM-51MRH
60-69 years, female
67.3
GTEX-1IDJH-0011-R9a-SM-ADEIN
70-79 years, male
67.2
GTEX-1POEN-0011-R9b-SM-G8LL1
30-39 years, female
67.0
GTEX-12584-0011-R9b-SM-GI4WC
40-49 years, male
66.9
GTEX-1HBPI-0011-R9b-SM-ARL76
50-59 years, male
65.9
GTEX-1GZ4I-0011-R9b-SM-B2LY8
50-59 years, male
65.3
GTEX-15EO6-0011-R9a-SM-6PALG
50-59 years, male
64.8
GTEX-13QJC-0011-R9b-SM-5PNX3
60-69 years, female
64.0
GTEX-1LSNL-0011-R9b-SM-EYYWK
50-59 years, male
63.9
GTEX-1HBPM-0011-R9b-SM-ARL7C
60-69 years, female
63.4
GTEX-11UD2-0011-R9b-SM-DO926
50-59 years, male
63.2
GTEX-11DXW-0011-R9a-SM-GHWOE
40-49 years, male
62.7
GTEX-1RAZS-0011-R9b-SM-G8OMS
50-59 years, male
62.5
GTEX-13NZA-0011-R9b-SM-5MR5I
60-69 years, male
62.3
GTEX-YFC4-0011-R9a-SM-4SOK4
40-49 years, female
61.4
GTEX-13S7M-0011-R9a-SM-5O9DW
60-69 years, female
61.3
GTEX-1CB4H-0011-R9a-SM-CKZNL
60-69 years, female
60.8
GTEX-11ZVC-0011-R9a-SM-57WC5
50-59 years, female
60.7
GTEX-1I19N-0011-R9a-SM-CMKHN
70-79 years, male
60.6
GTEX-1I1GV-0011-R9b-SM-ARZLE
60-69 years, male
60.6
GTEX-148VJ-0011-R9b-SM-5SI77
70-79 years, male
60.2
GTEX-1KANB-0011-R9b-SM-EZ6MO
50-59 years, male
59.7
GTEX-11ZTS-0011-R9b-SM-DO93Q
60-69 years, female
59.5
GTEX-NPJ7-0011-R9a-SM-G8W5X
60-69 years, female
59.3
GTEX-1CAV2-0011-R9b-SM-9WG5M
40-49 years, female
58.9
GTEX-15G19-0011-R9b-SM-7KUEE
60-69 years, male
58.3
GTEX-14E6C-0011-R9a-SM-6EU33
40-49 years, male
58.2
GTEX-1GN1U-0011-R9b-SM-CMKFW
50-59 years, female
57.7
GTEX-1PWST-0011-R9a-SM-G8OMQ
70-79 years, male
57.7
GTEX-14JIY-0011-R9a-SM-6EU34
60-69 years, male
57.3
GTEX-1GF9V-0011-R9a-SM-CL53K
60-69 years, male
57.1
GTEX-139T4-0011-R9b-SM-5HL6S
50-59 years, female
56.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E
60-69 years, male
56.2
GTEX-1JN6P-0011-R9a-SM-G8LM9
60-69 years, male
55.5
GTEX-13JUV-0011-R9a-SM-5LZX3
40-49 years, female
55.4
GTEX-13CZV-0011-R9a-SM-5LZXT
60-69 years, male
54.7
GTEX-13N2G-0011-R9b-SM-5MR4E
60-69 years, male
54.6
GTEX-12696-0011-R9a-SM-GHWPX
60-69 years, male
54.1
GTEX-1QP6S-0011-R9a-SM-G8LMO
40-49 years, male
53.2
GTEX-1OJC4-0011-R9a-SM-EZ6N1
50-59 years, female
52.4
GTEX-1R46S-0011-R9a-SM-EZ6N7
60-69 years, female
52.2
GTEX-QVJO-0011-R9A-SM-2S1QH
60-69 years, female
51.6
GTEX-1EH9U-0011-R9b-SM-9WG5T
60-69 years, male
51.5
GTEX-ZAJG-0011-R9a-SM-GNTAY
50-59 years, female
50.5
GTEX-14PN4-0011-R9a-SM-6LLH9
50-59 years, male
50.0
GTEX-1H23P-0011-R9a-SM-CM2T1
60-69 years, male
49.9
GTEX-1IY9M-0011-R9b-SM-D3L8J
60-69 years, male
48.3
GTEX-ZE9C-0011-R9a-SM-4WWCY
60-69 years, male
48.3
GTEX-11EMC-0011-R9b-SM-DO921
60-69 years, female
48.1
GTEX-ZAB4-0011-R9a-SM-4SOKG
40-49 years, male
48.1
GTEX-15DCD-0011-R9b-SM-7KUED
70-79 years, female
47.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ
60-69 years, male
47.0
GTEX-1A8G6-0011-R9a-SM-GOQZR
60-69 years, male
46.2
GTEX-1GN2E-0011-R9b-SM-9WG7F
60-69 years, male
46.2
GTEX-11ONC-0011-R9b-SM-5NQ8J
60-69 years, male
45.9
GTEX-1MJK2-0011-R9b-SM-EZ6MZ
50-59 years, male
45.6
GTEX-1KD4Q-0011-R9a-SM-G8LLU
40-49 years, male
45.5
GTEX-TSE9-0011-R9A-SM-3DB7Q
60-69 years, female
43.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ
70-79 years, male
43.3
GTEX-113JC-0011-R9a-SM-H6Q8K
50-59 years, female
42.9
GTEX-1J8EW-0011-R9b-SM-D4P2F
60-69 years, female
42.5
GTEX-1N5O9-0011-R9a-SM-G8LLD
60-69 years, male
42.3
GTEX-13OW5-0011-R9b-SM-5O9CL
60-69 years, male
41.9
GTEX-12WSD-0011-R9a-SM-5GU6W
60-69 years, female
41.2
GTEX-14BIM-0011-R9a-SM-6LLJL
60-69 years, female
41.1
GTEX-1J1OQ-0011-R9b-SM-GRR22
40-49 years, female
40.6
GTEX-1JMQL-0011-R9b-SM-G8LLH
50-59 years, female
40.2
GTEX-ZV68-0011-R9b-SM-GNTB9
50-59 years, female
38.8
GTEX-1HR98-0011-R9b-SM-ARL79
60-69 years, male
38.6
GTEX-15UF6-0011-R9b-SM-GOQZG
70-79 years, female
38.1
GTEX-1F52S-0011-R9a-SM-9WG62
60-69 years, female
38.1
GTEX-X4EP-0011-R9B-SM-4QASI
60-69 years, female
37.9
GTEX-1269C-0011-R9b-SM-GI4WM
60-69 years, female
37.5
GTEX-1I1HK-0011-R9a-SM-CMKHK
60-69 years, male
36.8
GTEX-15CHQ-0011-R9a-SM-6LLHX
60-69 years, male
36.0
GTEX-1LVA9-0011-R9a-SM-EYYWF
50-59 years, male
35.7
GTEX-1192X-0011-R9b-SM-DO934
50-59 years, male
35.2
GTEX-ZF28-0011-R9a-SM-4WWDY
60-69 years, male
34.9
GTEX-12WSH-0011-R9b-SM-5LZUG
50-59 years, male
34.8
GTEX-13OVJ-0011-R9b-SM-5L3GD
50-59 years, female
34.8
GTEX-13NYB-0011-R9b-SM-5MR5P
40-49 years, male
34.6
GTEX-1J8JJ-0011-R9a-SM-ACKVF
60-69 years, female
34.6
GTEX-1C6VS-0011-R9b-SM-9WG5W
60-69 years, male
34.0
GTEX-13O1R-0011-R9b-SM-5KM33
60-69 years, male
33.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY
60-69 years, male
33.5
GTEX-11WQK-0011-R9b-SM-5BC6N
50-59 years, male
33.0
GTEX-13PL6-0011-R9b-SM-5O9CH
40-49 years, female
31.0
GTEX-12WSC-0011-R9a-SM-5GU4U
50-59 years, male
29.9
GTEX-NL4W-0011-R9a-SM-2I3G1
50-59 years, male
29.9
GTEX-11GSP-0011-R9b-SM-5NQ77
60-69 years, female
29.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7
60-69 years, male
28.5
GTEX-13FLV-0011-R9b-SM-5L3DA
50-59 years, male
27.1
GTEX-1H1DG-0011-R9b-SM-ACKVB
70-79 years, male
25.2
GTEX-1JMOU-0011-R9b-SM-EY5YI
60-69 years, female
24.5
GTEX-ZZPT-0011-R9a-SM-GOQYS
50-59 years, male
23.0
GTEX-OXRO-0011-R9A-SM-3NB1X
60-69 years, female
22.8
GTEX-13SLW-0011-R9a-SM-5O9BT
70-79 years, male
22.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP
50-59 years, male
21.2
GTEX-1IGQW-0011-R9b-SM-D4P25
60-69 years, male
20.2
GTEX-OHPN-0011-R9A-SM-5TDEJ
60-69 years, female
20.0
GTEX-11DZ1-0011-R9a-SM-DO933
50-59 years, male
19.7
GTEX-1H1DF-0011-R9b-SM-CM2RN
40-49 years, female
19.6
GTEX-16NPV-0011-R9b-SM-79ONF
50-59 years, female
19.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR
60-69 years, female
18.3
GTEX-13NYS-0011-R9b-SM-5MR44
60-69 years, male
17.5
GTEX-12WSI-0011-R9b-SM-GHWOU
50-59 years, male
17.2
GTEX-1HSMO-0011-R9b-SM-CM2T2
60-69 years, male
17.0
GTEX-PWO3-0011-R9A-SM-EVR2V
60-69 years, female
15.9
GTEX-1JJ6O-0011-R9a-SM-EYYXP
60-69 years, male
15.7
GTEX-1J8Q2-0011-R9b-SM-GPRYH
60-69 years, male
15.2
GTEX-1LKK1-0011-R9a-SM-G8OLY
50-59 years, female
14.1
GTEX-1LH75-0011-R9b-SM-EY5Y9
50-59 years, female
12.8
GTEX-13CIG-0011-R9a-SM-5K7VU
50-59 years, male
12.1
GTEX-13X6I-0011-R9b-SM-5PNZJ
60-69 years, male
11.8
GTEX-1H2FU-0011-R9b-SM-CE6S4
60-69 years, female
8.6
GTEX-15DDE-0011-R9b-SM-6M46U
50-59 years, female
8.5
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SPINAL CORD - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
313.6
Macaque sample
Sample description
nTPM
Dorsal spinal cord nTPM: 211.9
Samples: 2
Max nTPM: 238.5
Min nTPM: 185.2
Sample A
185.2
Sample B
238.5
Ventral spinal cord nTPM: 313.6
Samples: 1
Max nTPM: 313.6
Min nTPM: 313.6
Sample A
313.6
SPINAL CORD - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
173.9
Pig sample
Sample description
nTPM
Dorsal spinal cord nTPM: 110.2
Samples: 4
Max nTPM: 145.0
Min nTPM: 68.6
Sample A
Female
138.6
Sample B
Female
88.5
Sample C
Male
68.6
Sample D
Male
145.0
Ventral spinal cord nTPM: 173.9
Samples: 4
Max nTPM: 192.1
Min nTPM: 138.3
Sample A
Female
189.0
Sample B
Female
192.1
Sample C
Male
176.2
Sample D
Male
138.3
SPINAL CORD - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
316.2
Mouse sample
Sample description
nTPM
Spinal cord nTPM: 316.2
Samples: 4
Max nTPM: 335.6
Min nTPM: 297.4
Sample A
297.4
Sample B
335.6
Sample C
303.5
Sample D
328.3
SPINAL CORD - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
178.9
Rat sample
Sample description
nTPM
Ventral spinal cord nTPM: 178.9
Samples: 4
Max nTPM: 193.3
Min nTPM: 150.3
Sample A
184.9
Sample A
187.2
Sample A
193.3
Sample A
150.3
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The Human Protein Atlas project is funded
