On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
9.9
nTPM
HPA Brain:
82.1
nTPM
GTEx:
9.9
nTPM
FANTOM5:
49.5
Scaled Tags Per Million
Macaque:
95.6
nTPM
Mouse:
96.4
nTPM
Rat:
96.0
nTPM
Pig:
106.2
nTPM
MIDBRAIN - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - MIDBRAIN, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Inhibitory (GAD1/2) RORB+ K
c-2
Excitatory (VGLUT1) ETV1+ Z...
c-3
Inhibitory (GAD1/2) RORB+ K
c-4
Inhibitory (GAD1/2) RORB+ K
c-5
Unassigned
c-6
Tectum Excitatory (VGLUT2)
c-7
Inhibitory (GAD1/2)
c-8
Inhibitory (GAD1/2) TFAP2B+
c-9
Excitatory (VGLUT2)
c-10
Excitatory (VGLUT2)
c-11
Tectum Inhibitory (GAD1/2)
c-12
Excitatory (VGLUT2) TFAP2B+
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2)
c-15
Tectum Excitatory (VGLUT2)
c-16
Excitatory (VGLUT2)
c-17
Inhibitory (GAD1/2)
c-18
Excitatory (VGLUT2)
c-19
Inhibitory (GAD1/2)
c-20
Inhibitory (GAD1/2)
c-21
Excitatory (VGLUT2)
c-22
Excitatory (VGLUT2)
c-23
Inhibitory (GAD1/2) TFAP2B+
c-24
Inhibitory (GAD1/2)
c-25
Excitatory (VGLUT2) CRH+ CA...
c-26
Inhibitory (GAD1/2) SST+
c-27
Inhibitory (GAD1/2) NPY+
c-28
Inhibitory (GAD1/2) RORB+ K
c-29
Excitatory (VGLUT2) TFAP2B+
c-30
Excitatory (VGLUT2)
c-31
Dopaminergic TH+ LMX1A+ SLC...
c-32
Inhibitory (GAD1/2) PVALB+
c-33
Tegmentum Excitatory (VGLUT...
c-34
Excitatory (VGLUT2) LMX1A+
c-35
Tegmentum Inhibitory (GAD2)...
c-36
TPH2+
c-37
Inhibitory (GAD1/2) CXCL14+
c-38
Excitatory (VGLUT1) SATB2+
c-39
Inhibitory (GAD1/2) RORB+ K
c-40
Excitatory (VGLUT2) MEIS2+
c-41
Inhibitory (GAD1/2) TFAP2B+
c-42
Excitatory (VGLUT2)
c-43
Excitatory (VGLUT1)
c-44
SN Monoaminergic Inhibitory...
c-45
Inhibitory (GAD1/2)
c-46
Excitatory (VGLUT1) GRP+
c-47
Inhibitory (GAD1/2) PVALB+ ...
c-48
Excitatory (VGLUT1)
c-49
Inhibitory (GAD1/2) LAMP5+
c-50
Excitatory (VGLUT2) KIT+
c-51
Excitatory (VGLUT1) SLC5A7+
c-52
Inhibitory (GAD1/2) NOS1+ G...
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - MIDBRAIN, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Microglia
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Astrocytes
c-7
Oligodendrocytes
c-8
Oligodendrocytes
c-9
Oligodendrocytes
c-10
Oligodendrocytes
c-11
Oligodendrocytes
c-12
Astrocytes
c-13
Fibroblasts
c-14
NK-cells & T-cells
c-15
Macrophages
c-16
Ependymal cells
c-17
Capillary endothelial cells
c-18
Pericytes
c-19
Oligodendrocyte progenitor ...
c-20
Immature oligodendrocytes
c-21
Vascular smooth muscle cell
c-22
Oligodendrocyte progenitor ...
c-23
B-cells & Monocytes doublet
c-24
Arterial endothelial cells
c-25
CD44+ Mural cells
c-26
Bergmann glia
c-27
Oligodendrocytes & Lymphocy
c-28
Macrophages & Monocytes
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
82.1
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 62.7
2219
Male, age 76, both hemispheres
79.1
2666
Male, age 74, left hemisphere
72.3
2586
Male, age 75, left hemisphere
72.0
1827
Male, age 72, unknown
70.3
2828
Female, age 72, unknown
60.2
2411
Female, age 72, unknown
59.0
1833
Male, age 53, unknown
58.9
1830
Male, age 51, unknown
53.4
1870
Female, age 42, unknown
51.4
2019
Male, age 18, unknown
50.6
Dorsal raphe nucleus nTPM: 59.8
2047
Male, age 72, unknown
65.2
2750
Male, age 76, both hemispheres
63.5
2298
Female, age 72, unknown
58.2
1828
Male, age 53, unknown
57.4
2016
Female, age 72, unknown
54.7
Inferior colliculus nTPM: 62.4
2849
Male, age 72, unknown
66.8
1848
Female, age 42, unknown
65.6
2097
Female, age 72, unknown
60.8
1890
Male, age 53, unknown
56.5
Median raphe nucleus nTPM: 82.1
2220
Male, age 76, midline
82.1
Periaquaductal grey, anterior nTPM: 69.7
1947
Male, age 18, unknown
74.9
1795
Male, age 51, unknown
70.1
2502
Female, age 75, unknown
64.0
Periaquaductal grey, dorsal nTPM: 58.7
2850
Male, age 76, both hemispheres
62.3
1831
Male, age 72, unknown
58.9
1840
Male, age 53, unknown
57.4
2464
Female, age 72, unknown
56.2
Periaquaductal grey, lateral nTPM: 55.5
2272
Male, age 74, both hemispheres
56.2
2140
Male, age 76, both hemispheres
55.5
2053
Male, age 18, unknown
54.9
Pretectal area nTPM: 61.8
1816
Male, age 51, unknown
74.5
1817
Female, age 42, unknown
71.8
2007
Male, age 72, unknown
68.9
1815
Male, age 53, unknown
68.3
2667
Female, age 75, unknown
67.2
2825
Male, age 18, unknown
64.7
1944
Female, age 72, unknown
61.8
2224
Female, age 72, unknown
60.8
2407
Male, age 75, both hemispheres
48.5
2316
Male, age 76, right hemisphere
48.3
2273
Male, age 74, both hemispheres
45.0
Red nucleus nTPM: 54.2
2588
Male, age 74, left hemisphere
64.7
2503
Female, age 72, unknown
60.6
2584
Male, age 75, left hemisphere
60.3
2725
Female, age 75, unknown
58.4
1821
Female, age 72, unknown
57.9
1954
Female, age 42, unknown
53.5
2227
Male, age 72, unknown
51.1
2785
Male, age 18, unknown
51.1
1865
Male, age 51, unknown
49.5
2769
Male, age 72, unknown
47.9
1904
Male, age 53, unknown
47.6
2823
Male, age 76, right hemisphere
47.3
Substantia nigra nTPM: 67.0
1916
Female, age 42, unknown
92.8
1941
Male, age 53, unknown
74.9
2665
Male, age 74, both hemispheres
74.6
2241
Male, age 72, unknown
69.7
1851
Male, age 51, unknown
67.7
2699
Male, age 18, unknown
66.7
1889
Female, age 72, unknown
65.6
2590
Female, age 75, unknown
60.2
2583
Male, age 75, right hemisphere
58.0
2409
Female, age 72, unknown
39.3
Superior colliculus nTPM: 59.7
2664
Male, age 75, both hemispheres
71.5
1796
Male, age 53, unknown
68.3
2261
Male, age 18, unknown
66.4
2087
Female, age 72, unknown
65.0
1839
Male, age 51, unknown
63.5
1895
Male, age 76, right hemisphere
58.8
2668
Female, age 75, unknown
58.5
2587
Male, age 74, left hemisphere
53.1
1913
Female, age 42, unknown
48.6
1995
Male, age 72, unknown
43.7
Ventral tegmental area nTPM: 66.1
2218
Male, age 76, both hemispheres
84.9
1915
Female, age 42, unknown
67.3
2410
Female, age 72, unknown
63.4
2021
Male, age 53, unknown
62.0
1942
Male, age 51, unknown
60.6
2223
Female, age 72, unknown
58.1
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
9.9
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 9.9
Samples: 183
Max nTPM: 26.1
Min nTPM: 4.7
Std nTPM: 3.8
Median nTPM: 8.6
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
26.1
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
24.6
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
22.3
GTEX-117XS-0011-R2b-SM-GI4VT
60-69 years, male
21.6
GTEX-13OW7-0011-R2b-SM-H6Q8E
50-59 years, male
19.9
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
19.7
GTEX-WVLH-0011-R2A-SM-3MJFJ
50-59 years, male
19.4
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
18.8
GTEX-11NUK-0011-R2a-SM-GINAO
50-59 years, male
18.2
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
17.1
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
16.9
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
16.8
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
16.3
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
15.8
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
15.3
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
15.2
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
15.2
GTEX-1PPGY-0011-R2b-SM-F33YW
60-69 years, male
15.0
GTEX-1PIIG-0011-R2b-SM-F648W
30-39 years, male
14.8
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
14.5
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
14.4
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
14.3
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
14.2
GTEX-111FC-0011-R2a-SM-GIN8S
60-69 years, male
14.0
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
14.0
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
13.9
GTEX-16GPK-0011-R2a-SM-GRR1F
60-69 years, male
13.8
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
13.7
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
13.4
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
13.3
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
13.3
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
13.2
GTEX-1MJK2-0011-R2b-SM-EXUS5
50-59 years, male
13.1
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
13.0
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
12.9
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
12.7
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
12.7
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
12.6
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
12.5
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
12.2
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
11.8
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
11.8
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
11.7
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
11.7
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
11.6
GTEX-1QMI2-0011-R2b-SM-F648R
60-69 years, male
11.5
GTEX-1KD4Q-0011-R2a-SM-F649I
40-49 years, male
11.4
GTEX-1RQEC-0011-R2b-SM-EY5ZT
60-69 years, male
11.3
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
11.2
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
11.2
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
11.2
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
11.2
GTEX-13OVL-0011-R2b-SM-H65ZN
50-59 years, male
11.0
GTEX-1LSVX-0011-R2a-SM-G8OL9
60-69 years, male
11.0
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
11.0
GTEX-1N2EF-0011-R2b-SM-F6482
60-69 years, male
11.0
GTEX-WL46-0011-R2A-SM-3LK6O
50-59 years, male
11.0
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
10.8
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
10.8
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
10.8
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
10.6
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
10.6
GTEX-QVJO-0011-R2A-SM-2S1QK
60-69 years, female
10.5
GTEX-15SHU-0011-R2a-SM-GPRXS
40-49 years, female
10.4
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
10.3
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
10.2
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
10.1
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
10.0
GTEX-1N2EE-0011-R2a-SM-F649F
60-69 years, male
10.0
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
9.9
GTEX-1PWST-0011-R2b-SM-F3K5I
70-79 years, male
9.9
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
9.9
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
9.8
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
9.8
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
9.7
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
9.6
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
9.6
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
9.4
GTEX-1RQED-0011-R2a-SM-F3K5T
60-69 years, male
9.4
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
9.3
GTEX-1117F-0011-R2b-SM-GI4VL
60-69 years, female
9.2
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
9.2
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
9.2
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
9.1
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
9.0
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
8.9
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
8.9
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
8.9
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
8.7
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
8.7
GTEX-ZZPT-0011-R2a-SM-GNTB1
50-59 years, male
8.7
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
8.6
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
8.6
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
8.5
GTEX-1R9PO-0011-R2a-SM-F2TBH
60-69 years, female
8.5
GTEX-1RDX4-0011-R2b-SM-F649Z
50-59 years, female
8.5
GTEX-ZAK1-0011-R2a-SM-GPRX1
50-59 years, female
8.5
GTEX-1JMQJ-0011-R2a-SM-F6493
50-59 years, male
8.4
GTEX-ZYY3-0011-R2a-SM-GNTB2
60-69 years, female
8.4
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
8.3
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
8.3
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
8.3
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
8.3
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
8.3
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
8.3
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
8.3
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
8.2
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
8.2
GTEX-1192X-0011-R2b-SM-GI4VV
50-59 years, male
8.1
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
8.1
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
8.1
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
8.0
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
8.0
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
8.0
GTEX-1MCQQ-0011-R2a-SM-F649V
60-69 years, male
8.0
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
7.9
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
7.9
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
7.9
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
7.8
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
7.8
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
7.8
GTEX-1JJ6O-0011-R2a-SM-EY5ZO
60-69 years, male
7.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
7.7
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
7.7
GTEX-1P4AB-0011-R2a-SM-F649K
50-59 years, male
7.7
GTEX-1IDJH-0011-R2a-SM-GPI9D
70-79 years, male
7.6
GTEX-1KD5A-0011-R2b-SM-G9EPP
50-59 years, male
7.6
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
7.5
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
7.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
7.4
GTEX-1KWVE-0011-R2a-SM-G8OLX
30-39 years, male
7.4
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
7.4
GTEX-1N5O9-0011-R2a-SM-G8LM1
60-69 years, male
7.3
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
7.3
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
7.2
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
7.2
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
7.2
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
7.2
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
7.1
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
7.1
GTEX-1JMPZ-0011-R2a-SM-G8LLS
30-39 years, male
7.1
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
7.1
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
7.0
GTEX-11TTK-0011-R2b-SM-GJ3PU
60-69 years, female
7.0
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
7.0
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
7.0
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
6.9
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
6.9
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
6.9
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
6.9
GTEX-1POEN-0011-R2b-SM-G8LLP
30-39 years, female
6.8
GTEX-1R9K4-0011-R2b-SM-G8LLF
60-69 years, male
6.8
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
6.7
GTEX-1HBPH-0011-R2a-SM-GQ1DS
40-49 years, female
6.7
GTEX-1NV8Z-0011-R2b-SM-F648N
60-69 years, male
6.7
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
6.7
GTEX-1CB4J-0011-R2a-SM-9WG5N
60-69 years, male
6.6
GTEX-1NV5F-0011-R2a-SM-G8LME
60-69 years, female
6.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
6.5
GTEX-ZAJG-0011-R2a-SM-GNTAX
50-59 years, female
6.5
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
6.4
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
6.3
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
6.3
GTEX-15G19-0011-R2b-SM-H6Q7S
60-69 years, male
6.2
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
6.2
GTEX-1LG7Y-0011-R2b-SM-G8LMM
50-59 years, male
6.2
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
6.2
GTEX-1O9I2-0011-R2b-SM-F3K53
50-59 years, male
6.2
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
6.2
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
6.1
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
6.1
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
6.0
GTEX-12696-0011-R2b-SM-GHWPY
60-69 years, male
5.8
GTEX-1I19N-0011-R2b-SM-GPRYG
70-79 years, male
5.8
GTEX-X4EP-0011-R2B-SM-3P625
60-69 years, female
5.8
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
5.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
5.7
GTEX-1LKK1-0011-R2b-SM-G8OLT
50-59 years, female
5.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
5.4
GTEX-RN5K-0011-R2A-SM-GQ1CA
50-59 years, female
5.4
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
5.3
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
5.1
GTEX-1JN1M-0011-R2b-SM-G9EPE
60-69 years, female
4.7
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
95.6
Macaque sample
Sample description
nTPM
Substantia nigra nTPM: 82.1
Samples: 1
Max nTPM: 82.1
Min nTPM: 82.1
Sample A
82.1
Midbrain nTPM: 87.2
Samples: 1
Max nTPM: 87.2
Min nTPM: 87.2
Sample A
87.2
Superior colliculi nTPM: 95.6
Samples: 1
Max nTPM: 95.6
Min nTPM: 95.6
Sample A
95.6
MIDBRAIN - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
106.2
Pig sample
Sample description
nTPM
Substantia nigra nTPM: 106.2
Samples: 3
Max nTPM: 124.7
Min nTPM: 81.4
Sample A
Female
112.5
Sample B
Female
81.4
Sample C
Male
124.7
Midbrain nTPM: 104.4
Samples: 3
Max nTPM: 127.5
Min nTPM: 87.0
Sample B
Female
87.0
Sample C
Male
127.5
Sample D
Male
98.6
Periaqueductal gray nTPM: 87.4
Samples: 3
Max nTPM: 101.1
Min nTPM: 79.7
Sample B
Female
81.5
Sample C
Male
101.1
Sample D
Male
79.7
Superior colliculi nTPM: 87.8
Samples: 4
Max nTPM: 106.1
Min nTPM: 66.1
Sample A
Female
87.3
Sample B
Female
66.1
Sample C
Male
106.1
Sample D
Male
91.8
MIDBRAIN - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
96.4
Mouse sample
Sample description
nTPM
Midbrain nTPM: 96.4
Samples: 4
Max nTPM: 104.0
Min nTPM: 86.0
Sample A
86.0
Sample B
94.0
Sample C
104.0
Sample D
101.6
MIDBRAIN - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
96.0
Rat sample
Sample description
nTPM
Midbrain nTPM: 96.0
Samples: 4
Max nTPM: 99.8
Min nTPM: 92.9
Sample A
95.0
Sample A
99.8
Sample A
92.9
Sample A
96.4
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The Human Protein Atlas project is funded
