MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:14.3 nTPM
HPA Brain:47.4 nTPM
GTEx:14.3 nTPM
FANTOM5:125.8 Scaled Tags Per Million
Pig:67.3 nTPM
Mouse:42.8 nTPM
Allen mouse:0.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 47.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 43.3
1870 Female, age 42, unknown 49.5
2666 Male, age 74, left hemisphere 46.3
1827 Male, age 72, unknown 46.2
2411 Female, age 72, unknown 45.8
1833 Male, age 53, unknown 43.7
2019 Male, age 18, unknown 42.0
2828 Female, age 72, unknown 41.2
1830 Male, age 51, unknown 41.0
2219 Male, age 76, both hemispheres 40.3
2586 Male, age 75, left hemisphere 37.5
Dorsal raphe nucleus
nTPM: 45.4
2298 Female, age 72, unknown 49.2
2016 Female, age 72, unknown 45.2
1828 Male, age 53, unknown 44.9
2750 Male, age 76, both hemispheres 44.7
2047 Male, age 72, unknown 42.9
Inferior colliculus
nTPM: 45.1
2097 Female, age 72, unknown 47.7
2849 Male, age 72, unknown 45.0
1848 Female, age 42, unknown 44.0
1890 Male, age 53, unknown 43.7
Median raphe nucleus
nTPM: 45.0
2220 Male, age 76, midline 45.0
Periaquaductal grey, anterior
nTPM: 41.2
1795 Male, age 51, unknown 44.8
1947 Male, age 18, unknown 41.3
2502 Female, age 75, unknown 37.6
Periaquaductal grey, dorsal
nTPM: 47.4
2850 Male, age 76, both hemispheres 53.8
1840 Male, age 53, unknown 46.0
1831 Male, age 72, unknown 45.0
2464 Female, age 72, unknown 44.7
Periaquaductal grey, lateral
nTPM: 44.0
2140 Male, age 76, both hemispheres 49.1
2053 Male, age 18, unknown 42.9
2272 Male, age 74, both hemispheres 40.1
Pretectal area
nTPM: 45.2
1815 Male, age 53, unknown 51.2
1817 Female, age 42, unknown 51.1
2273 Male, age 74, both hemispheres 49.0
2007 Male, age 72, unknown 48.1
2667 Female, age 75, unknown 47.3
1816 Male, age 51, unknown 46.6
2825 Male, age 18, unknown 44.4
2224 Female, age 72, unknown 43.4
1944 Female, age 72, unknown 40.4
2316 Male, age 76, right hemisphere 38.4
2407 Male, age 75, both hemispheres 37.3
Red nucleus
nTPM: 43.4
1821 Female, age 72, unknown 53.3
1865 Male, age 51, unknown 45.9
1954 Female, age 42, unknown 44.7
1904 Male, age 53, unknown 44.1
2785 Male, age 18, unknown 43.6
2503 Female, age 72, unknown 43.4
2227 Male, age 72, unknown 42.8
2725 Female, age 75, unknown 42.3
2769 Male, age 72, unknown 41.7
2588 Male, age 74, left hemisphere 41.3
2823 Male, age 76, right hemisphere 40.3
2584 Male, age 75, left hemisphere 37.4
Substantia nigra
nTPM: 46.1
2241 Male, age 72, unknown 49.4
1889 Female, age 72, unknown 48.8
1916 Female, age 42, unknown 48.6
2699 Male, age 18, unknown 47.6
2409 Female, age 72, unknown 45.3
2665 Male, age 74, both hemispheres 45.1
2590 Female, age 75, unknown 44.8
2583 Male, age 75, right hemisphere 44.7
1851 Male, age 51, unknown 44.3
1941 Male, age 53, unknown 41.9
Superior colliculus
nTPM: 42.0
2668 Female, age 75, unknown 45.7
1796 Male, age 53, unknown 45.4
2587 Male, age 74, left hemisphere 43.6
1913 Female, age 42, unknown 43.4
2261 Male, age 18, unknown 42.6
2664 Male, age 75, both hemispheres 41.7
1839 Male, age 51, unknown 40.3
1995 Male, age 72, unknown 39.7
1895 Male, age 76, right hemisphere 39.0
2087 Female, age 72, unknown 38.6
Ventral tegmental area
nTPM: 42.8
2410 Female, age 72, unknown 46.2
2223 Female, age 72, unknown 44.9
1915 Female, age 42, unknown 43.6
2218 Male, age 76, both hemispheres 42.3
1942 Male, age 51, unknown 40.7
2021 Male, age 53, unknown 39.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 14.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 14.3
Samples: 183

Max nTPM: 46.2
Min nTPM: 4.4
Std nTPM: 5.4
Median nTPM: 13.3
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 46.2
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 33.1
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 31.4
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 30.5
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 29.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 28.3
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 28.2
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 27.2
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 24.8
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 24.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 23.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 125.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 125.8
FF:10158-103A5 76 years, female 125.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 67.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 61.7
Samples: 4

Max nTPM: 66.9
Min nTPM: 54.4
Sample A Female 66.9
Sample B Female 63.3
Sample C Male 54.4
Sample D Male 62.3
Midbrain
nTPM: 67.3
Samples: 4

Max nTPM: 88.9
Min nTPM: 55.1
Sample A Female 88.9
Sample B Female 67.2
Sample C Male 58.0
Sample D Male 55.1
Periaqueductal gray
nTPM: 65.8
Samples: 3

Max nTPM: 69.5
Min nTPM: 63.1
Sample B Female 64.8
Sample C Male 63.1
Sample D Male 69.5
Superior colliculi
nTPM: 60.1
Samples: 4

Max nTPM: 64.8
Min nTPM: 55.4
Sample A Female 62.6
Sample B Female 64.8
Sample C Male 55.4
Sample D Male 57.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 42.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 42.8
Samples: 4

Max nTPM: 46.6
Min nTPM: 36.9
Sample A Male 36.9
Sample B Male 43.3
Sample C Female 46.6
Sample D Female 44.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
68498956 Antisense, RP_050113_02_F10, Mouse strain C57BL/6J (56 days, male) 0.0

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