On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
173.4
nTPM
HPA Brain:
197.0
nTPM
GTEx:
173.4
nTPM
FANTOM5:
320.2
Scaled Tags Per Million
Macaque:
158.7
nTPM
Mouse:
79.3
nTPM
Rat:
104.0
nTPM
Pig:
293.6
nTPM
SPINAL CORD - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - SPINAL CORD, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Excitatory (VGLUT1) ETV1+ Z...
c-2
Excitatory (VGLUT2) SST+ GR...
c-3
Excitatory (VGLUT2)
c-4
Excitatory (VGLUT2) SST+ CX...
c-5
Excitatory (VGLUT2) SST+ TA...
c-6
Excitatory (VGLUT2) SST+ CA...
c-7
Excitatory (VGLUT2) SST+
c-8
Excitatory (VGLUT2) CXCL14+
c-9
Excitatory (VGLUT2) SST+
c-10
Inhibitory (GAD1/2) SLC6A5+...
c-11
Inhibitory (GAD1/2) PENK+ E...
c-12
Inhibitory (GAD1/2) SLC6A5+...
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2) CALB1+
c-15
Inhibitory (GAD1/2) SLC6A5+...
c-16
CALB1+ TRH+
c-17
Inhibitory (GAD1/2) SLC6A5+
c-18
Inhibitory (GAD1/2) SLC6A5+...
c-19
Inhibitory (GAD1/2) SLC6A5+...
c-20
Excitatory (VGLUT2) PENK+ T...
c-21
Inhibitory (GAD2) SLC6A5+ N
c-22
Inhibitory (GAD1/2) TAC1+ K...
c-23
Inhibitory (GAD1/2) SLC6A5+...
c-24
Excitatory (VGLUT2) TAC1+
c-25
Excitatory (VGLUT2)
c-26
Inhibitory (GAD1/2) SLC6A5+
c-27
Excitatory (VGLUT2) SST+ CA...
c-28
Inhibitory (GAD1/2) SLC6A5+...
c-29
Unassigned
c-30
Excitatory (VGLUT2) PENK+
c-31
Inhibitory (GAD1/2) PVALB+ ...
c-32
Excitatory (VGLUT2) PENK+ S...
c-33
Excitatory (VGLUT2)
c-34
Excitatory (VGLUT2) SST+ TA...
c-35
Excitatory (VGLUT2)
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - SPINAL CORD, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Oligodendrocytes
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Oligodendrocytes
c-7
Microglia
c-8
Astrocytes (CD44+)
c-9
Astrocytes (CD44+)
c-10
Astrocytes
c-11
Lymphocytes
c-12
Vascular endothelial cells
c-13
Microglia (SPP1+ HIF1A+)
c-14
Ependymal cells
c-15
Oligodendrocyte & OPC doubl
c-16
Pericytes
c-17
Fibroblasts
c-18
Immature oligodendrocytes
c-19
Macrophages
c-20
Myelinating schwann cells
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SPINAL CORD - PROTEINTALKS DB MS
Median intensity
1500
Sample
Intensity
Spinal cord_01
ND
Spinal cord_02
ND
Spinal cord_03
1947
Spinal cord_04
1053
Spinal cord_05
ND
Spinal cord_06
ND
Spinal cord_07
ND
Spinal cord_08
ND
SPINAL CORD - HPA Brain Stereo-seq
SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
197.0
Sample id
Sample description
nTPM
Anterior funiculus (white matter) nTPM: 177.4
2193
Male, age 75, both hemispheres
199.8
2818
Female, age 79, both hemispheres
178.3
2819
Male, age 47, both hemispheres
171.9
2734
Male, age 80, both hemispheres
159.6
Cervical spinal cord, central gray nTPM: 125.4
2048
Male, age 55, midline
147.4
1981
Female, age 72, midline
147.3
2816
Male, age 47, midline
126.6
2194
Female, age 79, both hemispheres
111.5
2565
Male, age 75, midline
94.0
Cervical spinal cord, dorsal horn nTPM: 145.4
2296
Male, age 66, both hemispheres
247.5
2173
Female, age 72, unknown
196.1
2069
Male, age 47, both hemispheres
140.8
1877
Male, age 55, unknown
112.0
2721
Male, age 90, both hemispheres
89.4
2297
Male, age 75, both hemispheres
86.8
Cervical spinal cord, ventral horn nTPM: 124.4
2098
Female, age 72, unknown
169.6
2068
Male, age 55, unknown
125.2
2820
Female, age 79, both hemispheres
123.5
2295
Male, age 66, both hemispheres
110.3
2809
Male, age 90, both hemispheres
110.3
2480
Male, age 75, both hemispheres
107.3
Dorsal funiculus (white matter) nTPM: 196.9
2810
Male, age 90, both hemispheres
241.9
2128
Male, age 75, both hemispheres
205.3
2817
Male, age 47, both hemispheres
187.6
2812
Male, age 66, both hemispheres
175.9
2064
Female, age 79, both hemispheres
174.0
Lateral funiculus (white matter) nTPM: 197.0
2099
Male, age 90, both hemispheres
258.4
2192
Male, age 75, both hemispheres
207.8
2094
Female, age 79, both hemispheres
193.2
2294
Male, age 66, both hemispheres
128.6
SPINAL CORD - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
173.4
GTEx sample id
Sample description
nTPM
Brain - Spinal cord (cervical c-1) Average nTPM: 173.4
Samples: 204
Max nTPM: 347.7
Min nTPM: 54.9
Std nTPM: 58.2
Median nTPM: 169.7
GTEX-139UW-0011-R9b-SM-5LZYT
60-69 years, male
347.7
GTEX-1HBPH-0011-R9a-SM-CMKH3
40-49 years, female
305.6
GTEX-1KANB-0011-R9b-SM-EZ6MO
50-59 years, male
302.8
GTEX-117YW-0011-R9a-SM-GHWPQ
50-59 years, male
301.2
GTEX-WL46-0011-R9A-SM-3MJFP
50-59 years, male
290.5
GTEX-13PLJ-0011-R9b-SM-5O9DV
60-69 years, female
281.3
GTEX-1GTWX-0011-R9a-SM-ADEH4
60-69 years, male
279.4
GTEX-WVLH-0011-R9A-SM-H7OHH
50-59 years, male
277.7
GTEX-13N1W-0011-R9b-SM-5MR4R
70-79 years, male
274.7
GTEX-12126-0011-R9b-SM-5BC6P
20-29 years, male
274.0
GTEX-14E7W-0011-R9a-SM-62LE6
70-79 years, male
272.2
GTEX-1CAV2-0011-R9b-SM-9WG5M
40-49 years, female
270.0
GTEX-13FTY-0011-R9b-SM-5KM2U
40-49 years, female
269.5
GTEX-11UD2-0011-R9b-SM-DO926
50-59 years, male
268.6
GTEX-11ZUS-0011-R9b-SM-5BC76
30-39 years, male
262.5
GTEX-1J8JJ-0011-R9a-SM-ACKVF
60-69 years, female
261.8
GTEX-145LU-0011-R9b-SM-5SI66
50-59 years, male
261.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3
60-69 years, male
256.9
GTEX-1A32A-0011-R9b-SM-7MGXD
50-59 years, female
256.0
GTEX-1I1GS-0011-R9b-SM-CMKHF
60-69 years, male
254.4
GTEX-1F6I4-0011-R9a-SM-CMKFU
60-69 years, male
254.1
GTEX-1F88F-0011-R9b-SM-9WG7L
60-69 years, female
253.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z
40-49 years, male
253.0
GTEX-131XW-0011-R9a-SM-5N9EO
50-59 years, female
252.0
GTEX-14E6C-0011-R9a-SM-6EU33
40-49 years, male
251.1
GTEX-1IY9M-0011-R9b-SM-D3L8J
60-69 years, male
247.3
GTEX-1JMLX-0011-R9a-SM-EYYXM
50-59 years, male
246.2
GTEX-1B8L1-0011-R9b-SM-9WG5U
60-69 years, male
244.6
GTEX-1IDJH-0011-R9a-SM-ADEIN
70-79 years, male
243.8
GTEX-1QMI2-0011-R9a-SM-G8ON7
60-69 years, male
241.8
GTEX-1J8EW-0011-R9b-SM-D4P2F
60-69 years, female
241.5
GTEX-14PJM-0011-R9b-SM-6EU35
50-59 years, female
241.3
GTEX-17EVQ-0011-R9b-SM-79OJY
70-79 years, male
240.3
GTEX-1GZHY-0011-R9a-SM-9WG5R
50-59 years, female
236.9
GTEX-1H1ZS-0011-R9a-SM-CM2SO
70-79 years, male
234.9
GTEX-1H3O1-0011-R9b-SM-CM2SQ
60-69 years, male
232.0
GTEX-15SHU-0011-R9a-SM-GNIOE
40-49 years, female
231.7
GTEX-148VJ-0011-R9b-SM-5SI77
70-79 years, male
231.6
GTEX-113JC-0011-R9a-SM-H6Q8K
50-59 years, female
231.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP
50-59 years, male
231.1
GTEX-1RAZS-0011-R9b-SM-G8OMS
50-59 years, male
230.5
GTEX-11ZU8-0011-R9b-SM-GHWOL
60-69 years, male
230.2
GTEX-1EKGG-0011-R9a-SM-CMKFV
60-69 years, male
228.8
GTEX-16Z82-0011-R9a-SM-7DUFA
60-69 years, male
224.9
GTEX-14ABY-0011-R9a-SM-5PNZK
50-59 years, male
224.7
GTEX-1GF9V-0011-R9a-SM-CL53K
60-69 years, male
224.0
GTEX-1I1CD-0011-R9a-SM-CMKHB
60-69 years, female
221.0
GTEX-1EU9M-0011-R9a-SM-9WG61
60-69 years, male
219.5
GTEX-1PIIG-0011-R9b-SM-G8OLU
30-39 years, male
218.0
GTEX-16XZZ-0011-R9b-SM-7DHKX
60-69 years, male
216.1
GTEX-1GN1U-0011-R9b-SM-CMKFW
50-59 years, female
215.6
GTEX-1IL2U-0011-R9a-SM-GPRYC
60-69 years, male
214.8
GTEX-14JFF-0011-R9b-SM-G9ERJ
60-69 years, male
213.3
GTEX-1LSNL-0011-R9b-SM-EYYWK
50-59 years, male
210.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L
70-79 years, female
209.3
GTEX-147GR-0011-R9a-SM-5S2UY
60-69 years, male
206.4
GTEX-1O9I2-0011-R9b-SM-G8OKW
50-59 years, male
204.6
GTEX-1MJK2-0011-R9b-SM-EZ6MZ
50-59 years, male
203.6
GTEX-11NV4-0011-R9a-SM-GHWPP
60-69 years, male
203.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY
60-69 years, male
202.0
GTEX-1A8G7-0011-R9b-SM-7IGQH
60-69 years, male
201.0
GTEX-15DYW-0011-R9b-SM-6PALB
60-69 years, female
200.5
GTEX-1GN2E-0011-R9b-SM-9WG7F
60-69 years, male
200.4
GTEX-13PVQ-0011-R9b-SM-5LU3B
50-59 years, male
198.0
GTEX-1MCQQ-0011-R9b-SM-G8OKM
60-69 years, male
197.9
GTEX-13OVL-0011-R9a-SM-5P9GX
50-59 years, male
196.5
GTEX-1C6VS-0011-R9b-SM-9WG5W
60-69 years, male
196.3
GTEX-13SLX-0011-R9b-SM-5SI6X
50-59 years, female
195.1
GTEX-13QIC-0011-R9a-SM-GI4WO
60-69 years, female
194.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A
40-49 years, male
193.6
GTEX-14BIN-0011-R9a-SM-5SI76
50-59 years, female
193.2
GTEX-14BMV-0011-R9b-SM-5ZZUA
50-59 years, male
192.8
GTEX-13CZV-0011-R9a-SM-5LZXT
60-69 years, male
189.8
GTEX-T6MN-0011-R9A-SM-32QOZ
50-59 years, male
189.7
GTEX-13112-0011-R9b-SM-GHWOV
50-59 years, male
188.9
GTEX-XMD1-0011-R9A-SM-4AT49
60-69 years, male
188.2
GTEX-ZVZQ-0011-R9a-SM-51MRH
60-69 years, female
188.0
GTEX-117XS-0011-R9b-SM-GHWOG
60-69 years, male
186.0
GTEX-T5JC-0011-R9A-SM-32PLV
20-29 years, male
185.6
GTEX-11WQK-0011-R9b-SM-5BC6N
50-59 years, male
185.0
GTEX-13FXS-0011-R9a-SM-5K7UI
50-59 years, male
185.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8
50-59 years, male
184.3
GTEX-1HBPI-0011-R9b-SM-ARL76
50-59 years, male
183.2
GTEX-13S7M-0011-R9a-SM-5O9DW
60-69 years, female
182.8
GTEX-1EH9U-0011-R9b-SM-9WG5T
60-69 years, male
182.8
GTEX-1212Z-0011-R9b-SM-GHWPM
60-69 years, male
182.4
GTEX-QDT8-0011-R9A-SM-CYPRD
30-39 years, female
181.9
GTEX-1PPGY-0011-R9a-SM-G8LMR
60-69 years, male
181.1
GTEX-1H23P-0011-R9a-SM-CM2T1
60-69 years, male
181.0
GTEX-ZE9C-0011-R9a-SM-4WWCY
60-69 years, male
181.0
GTEX-11ZTS-0011-R9b-SM-DO93Q
60-69 years, female
180.6
GTEX-1JMQJ-0011-R9b-SM-G8OKN
50-59 years, male
179.6
GTEX-1HBPM-0011-R9b-SM-ARL7C
60-69 years, female
179.2
GTEX-1LG7Y-0011-R9a-SM-G8LMA
50-59 years, male
177.9
GTEX-1I19N-0011-R9a-SM-CMKHN
70-79 years, male
173.8
GTEX-131YS-0011-R9b-SM-5EQLY
60-69 years, female
172.9
GTEX-1B933-0011-R9a-SM-79OOR
50-59 years, female
172.8
GTEX-11ZVC-0011-R9a-SM-57WC5
50-59 years, female
172.4
GTEX-1PWST-0011-R9a-SM-G8OMQ
70-79 years, male
172.3
GTEX-1JMPZ-0011-R9a-SM-G8OLH
30-39 years, male
171.5
GTEX-13VXU-0011-R9b-SM-5SI73
50-59 years, male
169.9
GTEX-15ER7-0011-R9b-SM-6PALF
20-29 years, female
169.8
GTEX-1NV8Z-0011-R9b-SM-G8OME
60-69 years, male
169.6
GTEX-13NZA-0011-R9b-SM-5MR5I
60-69 years, male
169.1
GTEX-14PJO-0011-R9b-SM-62LE9
60-69 years, male
169.1
GTEX-13PL6-0011-R9b-SM-5O9CH
40-49 years, female
169.0
GTEX-16NPV-0011-R9b-SM-79ONF
50-59 years, female
168.8
GTEX-1LVA9-0011-R9a-SM-EYYWF
50-59 years, male
168.5
GTEX-1269C-0011-R9b-SM-GI4WM
60-69 years, female
166.1
GTEX-11GSO-0011-R9b-SM-GI4VN
60-69 years, male
165.3
GTEX-1POEN-0011-R9b-SM-G8LL1
30-39 years, female
164.3
GTEX-15EO6-0011-R9a-SM-6PALG
50-59 years, male
164.1
GTEX-1R46S-0011-R9a-SM-EZ6N7
60-69 years, female
164.1
GTEX-1BAJH-0011-R9b-SM-7EPIQ
70-79 years, male
163.9
GTEX-14BIL-0011-R9a-SM-5SI7A
50-59 years, male
161.4
GTEX-14BIM-0011-R9a-SM-6LLJL
60-69 years, female
161.4
GTEX-13G51-0011-R9b-SM-GHWPS
60-69 years, male
159.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1
50-59 years, female
159.0
GTEX-16GPK-0011-R9a-SM-GPI9P
60-69 years, male
158.3
GTEX-12584-0011-R9b-SM-GI4WC
40-49 years, male
157.5
GTEX-YJ89-0011-R9a-SM-4SOK7
60-69 years, male
156.3
GTEX-111VG-0011-R9b-SM-GHWOB
60-69 years, male
156.0
GTEX-ZV68-0011-R9b-SM-GNTB9
50-59 years, female
154.8
GTEX-15G19-0011-R9b-SM-7KUEE
60-69 years, male
154.0
GTEX-1LSVX-0011-R9b-SM-G8LL2
60-69 years, male
152.2
GTEX-PWO3-0011-R9A-SM-EVR2V
60-69 years, female
151.6
GTEX-1HFI6-0011-R9b-SM-CMKH4
40-49 years, male
151.4
GTEX-1F52S-0011-R9a-SM-9WG62
60-69 years, female
150.6
GTEX-1C6VQ-0011-R9a-SM-7SB85
50-59 years, male
150.4
GTEX-11DXW-0011-R9a-SM-GHWOE
40-49 years, male
150.1
GTEX-12WSH-0011-R9b-SM-5LZUG
50-59 years, male
149.1
GTEX-11EMC-0011-R9b-SM-DO921
60-69 years, female
147.9
GTEX-14JIY-0011-R9a-SM-6EU34
60-69 years, male
147.8
GTEX-14PN4-0011-R9a-SM-6LLH9
50-59 years, male
144.3
GTEX-1IGQW-0011-R9b-SM-D4P25
60-69 years, male
143.9
GTEX-1JMQL-0011-R9b-SM-G8LLH
50-59 years, female
143.6
GTEX-1R9PO-0011-R9a-SM-G8LKP
60-69 years, female
143.0
GTEX-ZZPT-0011-R9a-SM-GOQYS
50-59 years, male
142.7
GTEX-YFC4-0011-R9a-SM-4SOK4
40-49 years, female
142.5
GTEX-ZAJG-0011-R9a-SM-GNTAY
50-59 years, female
139.7
GTEX-1H1DF-0011-R9b-SM-CM2RN
40-49 years, female
139.0
GTEX-13N2G-0011-R9b-SM-5MR4E
60-69 years, male
138.3
GTEX-15DCD-0011-R9b-SM-7KUED
70-79 years, female
138.1
GTEX-XLM4-0011-R9A-SM-4AT45
60-69 years, male
136.0
GTEX-OHPN-0011-R9A-SM-5TDEJ
60-69 years, female
135.6
GTEX-1GF9W-0011-R9b-SM-9WG7J
60-69 years, male
135.0
GTEX-1CB4H-0011-R9a-SM-CKZNL
60-69 years, female
132.4
GTEX-13JUV-0011-R9a-SM-5LZX3
40-49 years, female
132.2
GTEX-12WSI-0011-R9b-SM-GHWOU
50-59 years, male
132.0
GTEX-1KD4Q-0011-R9a-SM-G8LLU
40-49 years, male
131.9
GTEX-11NUK-0011-R9a-SM-GI4XG
50-59 years, male
131.8
GTEX-1192X-0011-R9b-SM-DO934
50-59 years, male
130.7
GTEX-13QJC-0011-R9b-SM-5PNX3
60-69 years, female
129.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP
60-69 years, male
127.9
GTEX-1RDX4-0011-R9b-SM-G8LMG
50-59 years, female
127.8
GTEX-11ONC-0011-R9b-SM-5NQ8J
60-69 years, male
126.8
GTEX-13O1R-0011-R9b-SM-5KM33
60-69 years, male
126.0
GTEX-NPJ7-0011-R9a-SM-G8W5X
60-69 years, female
126.0
GTEX-12696-0011-R9a-SM-GHWPX
60-69 years, male
125.9
GTEX-13FLV-0011-R9b-SM-5L3DA
50-59 years, male
125.4
GTEX-OXRO-0011-R9A-SM-3NB1X
60-69 years, female
124.4
GTEX-1HSMO-0011-R9b-SM-CM2T2
60-69 years, male
124.1
GTEX-1N5O9-0011-R9a-SM-G8LLD
60-69 years, male
121.6
GTEX-1HGF4-0011-R9a-SM-ADEH9
60-69 years, male
121.5
GTEX-ZF28-0011-R9a-SM-4WWDY
60-69 years, male
121.2
GTEX-ZAB4-0011-R9a-SM-4SOKG
40-49 years, male
120.7
GTEX-1I1HK-0011-R9a-SM-CMKHK
60-69 years, male
119.2
GTEX-139T4-0011-R9b-SM-5HL6S
50-59 years, female
118.7
GTEX-X4EP-0011-R9B-SM-4QASI
60-69 years, female
118.0
GTEX-1J1OQ-0011-R9b-SM-GRR22
40-49 years, female
117.1
GTEX-1ICLZ-0011-R9a-SM-ARL7E
60-69 years, male
116.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI
60-69 years, male
115.7
GTEX-1GN73-0011-R9a-SM-CKZO5
60-69 years, male
114.0
GTEX-1I1GV-0011-R9b-SM-ARZLE
60-69 years, male
114.0
GTEX-1JN1M-0011-R9a-SM-EZ6MR
60-69 years, female
113.1
GTEX-TSE9-0011-R9A-SM-3DB7Q
60-69 years, female
108.3
GTEX-1H3NZ-0011-R9a-SM-ADEH7
60-69 years, male
107.2
GTEX-11GSP-0011-R9b-SM-5NQ77
60-69 years, female
107.1
GTEX-NL4W-0011-R9a-SM-2I3G1
50-59 years, male
105.7
GTEX-13SLW-0011-R9a-SM-5O9BT
70-79 years, male
104.9
GTEX-12WSD-0011-R9a-SM-5GU6W
60-69 years, female
102.1
GTEX-11DZ1-0011-R9a-SM-DO933
50-59 years, male
101.8
GTEX-1JMOU-0011-R9b-SM-EY5YI
60-69 years, female
100.2
GTEX-13NYB-0011-R9b-SM-5MR5P
40-49 years, male
98.5
GTEX-1JN6P-0011-R9a-SM-G8LM9
60-69 years, male
98.2
GTEX-1QP6S-0011-R9a-SM-G8LMO
40-49 years, male
96.4
GTEX-15UF6-0011-R9b-SM-GOQZG
70-79 years, female
95.9
GTEX-1H1DG-0011-R9b-SM-ACKVB
70-79 years, male
92.9
GTEX-15CHQ-0011-R9a-SM-6LLHX
60-69 years, male
92.5
GTEX-13OW5-0011-R9b-SM-5O9CL
60-69 years, male
91.9
GTEX-12WSC-0011-R9a-SM-5GU4U
50-59 years, male
90.9
GTEX-1LKK1-0011-R9a-SM-G8OLY
50-59 years, female
83.2
GTEX-1H2FU-0011-R9b-SM-CE6S4
60-69 years, female
82.6
GTEX-1A8G6-0011-R9a-SM-GOQZR
60-69 years, male
82.2
GTEX-1J8Q2-0011-R9b-SM-GPRYH
60-69 years, male
81.0
GTEX-1HR98-0011-R9b-SM-ARL79
60-69 years, male
77.0
GTEX-13NYS-0011-R9b-SM-5MR44
60-69 years, male
74.3
GTEX-13X6I-0011-R9b-SM-5PNZJ
60-69 years, male
73.8
GTEX-1LH75-0011-R9b-SM-EY5Y9
50-59 years, female
70.1
GTEX-1LVAO-0011-R9a-SM-EZ6MY
60-69 years, male
65.2
GTEX-13CIG-0011-R9a-SM-5K7VU
50-59 years, male
63.6
GTEX-15DDE-0011-R9b-SM-6M46U
50-59 years, female
63.1
GTEX-QVJO-0011-R9A-SM-2S1QH
60-69 years, female
55.7
GTEX-13OVJ-0011-R9b-SM-5L3GD
50-59 years, female
54.9
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SPINAL CORD - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
158.7
Macaque sample
Sample description
nTPM
Dorsal spinal cord nTPM: 121.5
Samples: 2
Max nTPM: 123.1
Min nTPM: 119.9
Sample A
119.9
Sample B
123.1
Ventral spinal cord nTPM: 158.7
Samples: 1
Max nTPM: 158.7
Min nTPM: 158.7
Sample A
158.7
SPINAL CORD - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
293.6
Pig sample
Sample description
nTPM
Dorsal spinal cord nTPM: 251.1
Samples: 4
Max nTPM: 296.3
Min nTPM: 222.3
Sample A
Female
222.3
Sample B
Female
296.3
Sample C
Male
256.7
Sample D
Male
229.1
Ventral spinal cord nTPM: 293.6
Samples: 4
Max nTPM: 380.2
Min nTPM: 233.3
Sample A
Female
279.1
Sample B
Female
281.6
Sample C
Male
233.3
Sample D
Male
380.2
SPINAL CORD - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
79.3
Mouse sample
Sample description
nTPM
Spinal cord nTPM: 79.3
Samples: 4
Max nTPM: 95.5
Min nTPM: 64.8
Sample A
95.5
Sample B
64.8
Sample C
73.4
Sample D
83.6
SPINAL CORD - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
104.0
Rat sample
Sample description
nTPM
Ventral spinal cord nTPM: 104.0
Samples: 4
Max nTPM: 111.1
Min nTPM: 86.1
Sample A
110.0
Sample A
111.1
Sample A
108.9
Sample A
86.1
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The Human Protein Atlas project is funded
