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  • RNF13
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:173.4 nTPM
HPA Brain:145.0 nTPM
GTEx:173.4 nTPM
FANTOM5:320.2 Scaled Tags Per Million
Pig:292.2 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

145.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 124.9
2048 Male, age 55, midline 146.9
1981 Female, age 72, midline 146.8
2816 Male, age 47, midline 126.2
2194 Female, age 79, both hemispheres 111.1
2565 Male, age 75, midline 93.7
Cervical spinal cord, dorsal horn
nTPM: 145.0
2296 Male, age 66, both hemispheres 246.8
2173 Female, age 72, unknown 195.4
2069 Male, age 47, both hemispheres 140.3
1877 Male, age 55, unknown 111.6
2721 Male, age 90, both hemispheres 89.1
2297 Male, age 75, both hemispheres 86.6
Cervical spinal cord, ventral horn
nTPM: 124.0
2098 Female, age 72, unknown 169.0
2068 Male, age 55, unknown 124.8
2820 Female, age 79, both hemispheres 123.1
2295 Male, age 66, both hemispheres 109.9
2809 Male, age 90, both hemispheres 109.9
2480 Male, age 75, both hemispheres 107.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

173.4
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 173.4
Samples: 204

Max nTPM: 347.7
Min nTPM: 54.9
Std nTPM: 58.2
Median nTPM: 169.7
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 347.7
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 305.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 302.8
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 301.2
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 290.5
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 281.3
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 279.4
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 277.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 274.7
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 274.0
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 272.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 270.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 269.5
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 268.6
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 262.5
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 261.8
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 261.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 256.9
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 256.0
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 254.4
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 254.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 253.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 253.0
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 252.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 251.1
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 247.3
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 246.2
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 244.6
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 243.8
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 241.8
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 241.5
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 241.3
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 240.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 236.9
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 234.9
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 232.0
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 231.7
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 231.6
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 231.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 231.1
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 230.5
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 230.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 228.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 224.9
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 224.7
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 224.0
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 221.0
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 219.5
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 218.0
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 216.1
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 215.6
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 214.8
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 213.3
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 210.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 209.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 206.4
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 204.6
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 203.6
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 203.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 202.0
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 201.0
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 200.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 200.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 198.0
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 197.9
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 196.5
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 196.3
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 195.1
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 194.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 193.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 193.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 192.8
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 189.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 189.7
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 188.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 188.2
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 188.0
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 186.0
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 185.6
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 185.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 185.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 184.3
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 183.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 182.8
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 182.8
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 182.4
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 181.9
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 181.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 181.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 181.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 180.6
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 179.6
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 179.2
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 177.9
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 173.8
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 172.9
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 172.8
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 172.4
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 172.3
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 171.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 169.9
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 169.8
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 169.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 169.1
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 169.1
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 169.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 168.8
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 168.5
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 166.1
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 165.3
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 164.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 164.1
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 164.1
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 163.9
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 161.4
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 161.4
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 159.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 159.0
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 158.3
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 157.5
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 156.3
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 156.0
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 154.8
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 154.0
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 152.2
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 151.6
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 151.4
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 150.6
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 150.4
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 150.1
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 149.1
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 147.9
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 147.8
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 144.3
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 143.9
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 143.6
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 143.0
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 142.7
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 142.5
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 139.7
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 139.0
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 138.3
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 138.1
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 136.0
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 135.6
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 135.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 132.4
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 132.2
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 132.0
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 131.9
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 131.8
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 130.7
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 129.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 127.9
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 127.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 126.8
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 126.0
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 126.0
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 125.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 125.4
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 124.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 124.1
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 121.6
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 121.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 121.2
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 120.7
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 119.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 118.7
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 118.0
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 117.1
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 116.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 115.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 114.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 114.0
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 113.1
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 108.3
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 107.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 107.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 105.7
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 104.9
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 102.1
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 101.8
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 100.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 98.5
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 98.2
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 96.4
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 95.9
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 92.9
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 92.5
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 91.9
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 90.9
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 83.2
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 82.6
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 82.2
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 81.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 77.0
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 74.3
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 73.8
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 70.1
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 65.2
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 63.6
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 63.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 55.7
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 54.9
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

320.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 320.2
FF:10159-103A6 76 years, female 356.1
FF:10181-103D1 60 years, female 284.2

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

292.2
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 250.0
Samples: 4

Max nTPM: 294.9
Min nTPM: 221.5
Sample A Female 221.5
Sample B Female 294.9
Sample C Male 255.4
Sample D Male 228.1
Ventral spinal cord
nTPM: 292.2
Samples: 4

Max nTPM: 378.6
Min nTPM: 232.2
Sample A Female 278.0
Sample B Female 280.1
Sample C Male 232.2
Sample D Male 378.6

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