A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
5.4
nTPM
Monaco:
153.9
nTPM
Schmiedel:
71.2
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
5.4
HPA sample
nTPM
NK-cell nTPM: 5.4
Samples: 6
Max nTPM: 9.2
Min nTPM: 0.0
P10809_1013
9.0
P10809_1033
9.2
P10809_1052
8.1
P10809_1071
3.4
P10809_1093
0.0
P10809_1103
3.0
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
153.9
Monaco sample
nTPM
NK-cell nTPM: 153.9
Samples: 4
Max nTPM: 225.8
Min nTPM: 127.7
RHH5316_R3683
130.4
RHH5224_R3596
127.7
RHH5253_R3625
225.8
RHH5282_R3654
131.8
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
71.2
Schmiedel sample id
TPM
NK-cell TPM: 71.2
Samples: 90
Max TPM: 163.5
Min TPM: 15.7
NK_1
163.5
NK_2
157.0
NK_3
135.4
NK_4
130.6
NK_5
129.5
NK_6
125.7
NK_7
121.3
NK_8
118.0
NK_9
112.9
NK_10
108.4
NK_11
105.0
NK_12
104.8
NK_13
103.0
NK_14
102.4
NK_15
100.6
NK_16
100.5
NK_17
99.7
NK_18
99.3
NK_19
99.2
NK_20
98.0
NK_21
97.2
NK_22
95.9
NK_23
94.9
NK_24
91.0
NK_25
89.5
NK_26
88.3
NK_27
88.0
NK_28
86.3
NK_29
84.9
NK_30
83.8
NK_31
83.7
NK_32
83.3
NK_33
82.0
NK_34
81.8
NK_35
80.8
NK_36
79.7
NK_37
78.7
NK_38
77.3
NK_39
75.2
NK_40
72.0
NK_41
71.7
NK_42
71.0
NK_43
70.9
NK_44
69.1
NK_45
67.5
NK_46
66.4
NK_47
65.7
NK_48
64.4
NK_49
62.3
NK_50
62.0
NK_51
61.3
NK_52
61.0
NK_53
60.7
NK_54
59.1
NK_55
58.1
NK_56
58.0
NK_57
57.5
NK_58
57.0
NK_59
55.5
NK_60
54.8
NK_61
54.3
NK_62
53.9
NK_63
53.7
NK_64
52.5
NK_65
52.0
NK_66
50.7
NK_67
50.6
NK_68
49.4
NK_69
49.1
NK_70
47.0
NK_71
46.7
NK_72
44.3
NK_73
40.7
NK_74
39.8
NK_75
38.4
NK_76
38.0
NK_77
35.6
NK_78
34.8
NK_79
34.4
NK_80
32.0
NK_81
31.9
NK_82
30.9
NK_83
30.8
NK_84
28.1
NK_85
25.7
NK_86
25.1
NK_87
21.1
NK_88
19.8
NK_89
16.9
NK_90
15.7
Show allShow less
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Human Protein Atlas project is funded
