A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
40.3
nTPM
Monaco:
150.1
nTPM
Schmiedel:
55.2
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
40.3
HPA sample
nTPM
Classical monocyte nTPM: 40.3
Samples: 6
Max nTPM: 60.5
Min nTPM: 30.2
P10809_1003
60.5
P10809_1020
40.8
P10809_1039
38.9
P10809_1058
30.2
P10809_1080
34.4
P10809_1107
37.2
Intermediate monocyte nTPM: 34.4
Samples: 6
Max nTPM: 43.9
Min nTPM: 23.4
P10809_1004
37.7
P10809_1023
33.2
P10809_1042
38.8
P10809_1061
43.9
P10809_1081
23.4
P10809_1108
29.7
Non-classical monocyte nTPM: 32.5
Samples: 5
Max nTPM: 45.7
Min nTPM: 19.0
P10809_1005
45.7
P10809_1053
33.9
P10809_1072
38.2
P10809_1082
19.0
P10809_1109
25.6
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
150.1
Monaco sample
nTPM
Classical monocyte nTPM: 150.1
Samples: 4
Max nTPM: 175.5
Min nTPM: 127.7
RHH5313_R3680
167.9
RHH5221_R3593
129.4
RHH5250_R3622
175.5
RHH5279_R3651
127.7
Intermediate monocyte nTPM: 112.0
Samples: 4
Max nTPM: 119.6
Min nTPM: 103.6
RHH5314_R3681
103.6
RHH5222_R3594
119.6
RHH5251_R3623
111.4
RHH5280_R3652
113.3
Non-classical monocyte nTPM: 110.9
Samples: 4
Max nTPM: 122.2
Min nTPM: 98.0
RHH5315_R3682
111.1
RHH5223_R3595
122.2
RHH5252_R3624
112.1
RHH5281_R3653
98.0
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
55.2
Schmiedel sample id
TPM
Classical monocyte TPM: 55.2
Samples: 91
Max TPM: 76.1
Min TPM: 27.0
MONOCYTES_1
76.1
MONOCYTES_2
76.0
MONOCYTES_3
73.5
MONOCYTES_4
73.2
MONOCYTES_5
71.7
MONOCYTES_6
71.4
MONOCYTES_7
71.1
MONOCYTES_8
71.1
MONOCYTES_9
69.3
MONOCYTES_10
69.3
MONOCYTES_11
68.6
MONOCYTES_12
68.3
MONOCYTES_13
67.2
MONOCYTES_14
66.2
MONOCYTES_15
65.8
MONOCYTES_16
65.5
MONOCYTES_17
65.4
MONOCYTES_18
65.0
MONOCYTES_19
64.8
MONOCYTES_20
64.5
MONOCYTES_21
64.1
MONOCYTES_22
63.6
MONOCYTES_23
62.1
MONOCYTES_24
62.1
MONOCYTES_25
61.2
MONOCYTES_26
60.9
MONOCYTES_27
60.7
MONOCYTES_28
60.6
MONOCYTES_29
60.2
MONOCYTES_30
60.1
MONOCYTES_31
60.1
MONOCYTES_32
60.1
MONOCYTES_33
59.8
MONOCYTES_34
59.0
MONOCYTES_35
58.9
MONOCYTES_36
58.2
MONOCYTES_37
58.0
MONOCYTES_38
57.6
MONOCYTES_39
57.6
MONOCYTES_40
57.3
MONOCYTES_41
57.3
MONOCYTES_42
57.3
MONOCYTES_43
56.9
MONOCYTES_44
56.7
MONOCYTES_45
55.5
MONOCYTES_46
55.1
MONOCYTES_47
54.6
MONOCYTES_48
54.5
MONOCYTES_49
54.3
MONOCYTES_50
54.3
MONOCYTES_51
54.2
MONOCYTES_52
54.2
MONOCYTES_53
54.2
MONOCYTES_54
54.2
MONOCYTES_55
54.1
MONOCYTES_56
53.7
MONOCYTES_57
52.7
MONOCYTES_58
52.6
MONOCYTES_59
51.7
MONOCYTES_60
51.2
MONOCYTES_61
50.7
MONOCYTES_62
50.1
MONOCYTES_63
50.1
MONOCYTES_64
49.7
MONOCYTES_65
48.6
MONOCYTES_66
48.5
MONOCYTES_67
48.1
MONOCYTES_68
48.1
MONOCYTES_69
48.1
MONOCYTES_70
47.9
MONOCYTES_71
47.3
MONOCYTES_72
46.3
MONOCYTES_73
45.7
MONOCYTES_74
45.5
MONOCYTES_75
45.3
MONOCYTES_76
44.9
MONOCYTES_77
44.5
MONOCYTES_78
44.5
MONOCYTES_79
44.3
MONOCYTES_80
43.7
MONOCYTES_81
41.7
MONOCYTES_82
41.0
MONOCYTES_83
40.0
MONOCYTES_84
39.9
MONOCYTES_85
39.0
MONOCYTES_86
38.4
MONOCYTES_87
36.4
MONOCYTES_88
36.2
MONOCYTES_89
36.1
MONOCYTES_90
33.4
MONOCYTES_91
27.0
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Non-classical monocyte TPM: 38.0
Samples: 90
Max TPM: 58.5
Min TPM: 14.5
M2_1
58.5
M2_2
56.3
M2_3
55.8
M2_4
55.7
M2_5
55.2
M2_6
52.9
M2_7
52.8
M2_8
52.0
M2_9
51.8
M2_10
51.4
M2_11
50.4
M2_12
50.3
M2_13
48.4
M2_14
48.1
M2_15
48.0
M2_16
47.8
M2_17
47.3
M2_18
47.3
M2_19
47.2
M2_20
47.2
M2_21
46.8
M2_22
46.5
M2_23
45.6
M2_24
44.8
M2_25
44.5
M2_26
44.4
M2_27
44.1
M2_28
43.9
M2_29
43.8
M2_30
43.7
M2_31
43.2
M2_32
43.1
M2_33
43.1
M2_34
43.1
M2_35
42.9
M2_36
42.8
M2_37
42.3
M2_38
42.2
M2_39
41.9
M2_40
41.8
M2_41
41.7
M2_42
41.6
M2_43
41.5
M2_44
41.4
M2_45
41.1
M2_46
40.6
M2_47
40.6
M2_48
40.5
M2_49
40.2
M2_50
39.8
M2_51
39.1
M2_52
38.7
M2_53
38.2
M2_54
37.6
M2_55
36.3
M2_56
34.5
M2_57
34.3
M2_58
33.9
M2_59
33.7
M2_60
32.1
M2_61
31.8
M2_62
31.7
M2_63
31.6
M2_64
30.9
M2_65
30.3
M2_66
30.2
M2_67
29.6
M2_68
29.3
M2_69
28.9
M2_70
28.9
M2_71
28.3
M2_72
28.0
M2_73
27.9
M2_74
27.5
M2_75
27.1
M2_76
25.9
M2_77
25.4
M2_78
24.9
M2_79
24.1
M2_80
23.8
M2_81
23.3
M2_82
23.0
M2_83
22.1
M2_84
20.1
M2_85
19.9
M2_86
19.6
M2_87
18.5
M2_88
15.0
M2_89
14.5
M2_90
14.5
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