A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
18.9
nTPM
Monaco:
88.0
nTPM
Schmiedel:
82.0
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
18.9
HPA sample
nTPM
Classical monocyte nTPM: 15.2
Samples: 6
Max nTPM: 18.9
Min nTPM: 12.9
P10809_1003
15.6
P10809_1020
15.6
P10809_1039
18.9
P10809_1058
12.9
P10809_1080
15.2
P10809_1107
13.2
Intermediate monocyte nTPM: 17.7
Samples: 6
Max nTPM: 34.2
Min nTPM: 10.1
P10809_1004
15.7
P10809_1023
12.1
P10809_1042
20.5
P10809_1061
34.2
P10809_1081
10.1
P10809_1108
13.6
Non-classical monocyte nTPM: 18.9
Samples: 5
Max nTPM: 33.3
Min nTPM: 10.9
P10809_1005
16.5
P10809_1053
19.7
P10809_1072
33.3
P10809_1082
10.9
P10809_1109
14.1
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
88.0
Monaco sample
nTPM
Classical monocyte nTPM: 85.6
Samples: 4
Max nTPM: 116.0
Min nTPM: 70.0
RHH5313_R3680
70.7
RHH5221_R3593
116.0
RHH5250_R3622
85.8
RHH5279_R3651
70.0
Intermediate monocyte nTPM: 86.4
Samples: 4
Max nTPM: 105.8
Min nTPM: 76.9
RHH5314_R3681
76.9
RHH5222_R3594
105.8
RHH5251_R3623
82.2
RHH5280_R3652
80.5
Non-classical monocyte nTPM: 88.0
Samples: 4
Max nTPM: 114.4
Min nTPM: 69.6
RHH5315_R3682
69.6
RHH5223_R3595
114.4
RHH5252_R3624
82.9
RHH5281_R3653
85.2
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
82.0
Schmiedel sample id
TPM
Classical monocyte TPM: 62.4
Samples: 91
Max TPM: 90.7
Min TPM: 41.1
MONOCYTES_1
90.7
MONOCYTES_2
85.4
MONOCYTES_3
81.7
MONOCYTES_4
80.0
MONOCYTES_5
78.0
MONOCYTES_6
77.7
MONOCYTES_7
77.6
MONOCYTES_8
75.0
MONOCYTES_9
73.7
MONOCYTES_10
73.2
MONOCYTES_11
73.0
MONOCYTES_12
72.1
MONOCYTES_13
71.8
MONOCYTES_14
71.7
MONOCYTES_15
71.5
MONOCYTES_16
71.2
MONOCYTES_17
71.1
MONOCYTES_18
71.0
MONOCYTES_19
70.2
MONOCYTES_20
69.9
MONOCYTES_21
69.4
MONOCYTES_22
69.3
MONOCYTES_23
69.3
MONOCYTES_24
69.1
MONOCYTES_25
68.6
MONOCYTES_26
68.4
MONOCYTES_27
68.2
MONOCYTES_28
67.8
MONOCYTES_29
67.7
MONOCYTES_30
67.6
MONOCYTES_31
67.5
MONOCYTES_32
67.4
MONOCYTES_33
66.8
MONOCYTES_34
66.7
MONOCYTES_35
66.1
MONOCYTES_36
66.0
MONOCYTES_37
65.9
MONOCYTES_38
65.9
MONOCYTES_39
65.2
MONOCYTES_40
64.5
MONOCYTES_41
64.5
MONOCYTES_42
63.9
MONOCYTES_43
63.4
MONOCYTES_44
63.0
MONOCYTES_45
62.8
MONOCYTES_46
62.5
MONOCYTES_47
62.4
MONOCYTES_48
61.9
MONOCYTES_49
60.5
MONOCYTES_50
60.1
MONOCYTES_51
60.0
MONOCYTES_52
59.7
MONOCYTES_53
59.3
MONOCYTES_54
59.1
MONOCYTES_55
59.0
MONOCYTES_56
58.4
MONOCYTES_57
58.4
MONOCYTES_58
58.0
MONOCYTES_59
57.4
MONOCYTES_60
57.0
MONOCYTES_61
56.9
MONOCYTES_62
56.6
MONOCYTES_63
56.6
MONOCYTES_64
56.3
MONOCYTES_65
55.6
MONOCYTES_66
55.5
MONOCYTES_67
55.5
MONOCYTES_68
55.2
MONOCYTES_69
55.0
MONOCYTES_70
55.0
MONOCYTES_71
54.5
MONOCYTES_72
54.4
MONOCYTES_73
53.6
MONOCYTES_74
53.3
MONOCYTES_75
53.1
MONOCYTES_76
52.5
MONOCYTES_77
52.4
MONOCYTES_78
52.0
MONOCYTES_79
51.6
MONOCYTES_80
51.2
MONOCYTES_81
50.6
MONOCYTES_82
50.4
MONOCYTES_83
49.7
MONOCYTES_84
49.4
MONOCYTES_85
48.6
MONOCYTES_86
47.9
MONOCYTES_87
47.5
MONOCYTES_88
47.4
MONOCYTES_89
46.7
MONOCYTES_90
44.9
MONOCYTES_91
41.1
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Non-classical monocyte TPM: 82.0
Samples: 90
Max TPM: 125.2
Min TPM: 51.0
M2_1
125.2
M2_2
124.2
M2_3
115.1
M2_4
113.9
M2_5
111.6
M2_6
109.6
M2_7
105.8
M2_8
105.6
M2_9
104.9
M2_10
102.4
M2_11
98.9
M2_12
98.9
M2_13
98.7
M2_14
98.3
M2_15
98.1
M2_16
97.1
M2_17
96.2
M2_18
94.4
M2_19
93.5
M2_20
93.3
M2_21
93.1
M2_22
92.3
M2_23
91.9
M2_24
91.6
M2_25
91.2
M2_26
90.8
M2_27
90.0
M2_28
89.8
M2_29
88.4
M2_30
88.3
M2_31
88.3
M2_32
87.3
M2_33
87.3
M2_34
87.2
M2_35
86.7
M2_36
86.1
M2_37
85.9
M2_38
85.7
M2_39
85.1
M2_40
84.7
M2_41
83.6
M2_42
83.6
M2_43
83.0
M2_44
83.0
M2_45
82.4
M2_46
82.2
M2_47
81.2
M2_48
81.0
M2_49
79.6
M2_50
79.4
M2_51
78.7
M2_52
78.2
M2_53
77.6
M2_54
77.1
M2_55
77.0
M2_56
76.6
M2_57
76.3
M2_58
75.7
M2_59
75.3
M2_60
75.1
M2_61
74.7
M2_62
74.4
M2_63
73.6
M2_64
72.2
M2_65
71.7
M2_66
70.3
M2_67
69.9
M2_68
69.5
M2_69
69.4
M2_70
69.1
M2_71
68.0
M2_72
68.0
M2_73
66.7
M2_74
66.1
M2_75
66.1
M2_76
64.9
M2_77
64.6
M2_78
64.5
M2_79
62.9
M2_80
62.0
M2_81
60.5
M2_82
60.0
M2_83
59.9
M2_84
59.1
M2_85
57.9
M2_86
56.9
M2_87
54.9
M2_88
54.7
M2_89
54.6
M2_90
51.0
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