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  • SUMMARY

  • TISSUE

  • BRAIN

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  • SUBCELL

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  • BLOOD

  • CELL LINE

  • STRUCTURE

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  • RPS5
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:487.4 nTPM
FANTOM5:254.4 Scaled Tags Per Million
Pig:155.1 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA055878Antibody HPA061979
Glial cells Not detectedMedium
Neuronal cells MediumMedium




CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

487.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 487.4
Samples: 300

Max nTPM: 1267.0
Min nTPM: 216.7
Std nTPM: 141.9
Median nTPM: 465.3
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 1267.0
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 1131.3
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 983.8
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 929.2
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 924.9
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 882.0
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 834.4
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 823.8
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 801.4
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 794.6
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 787.4
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 783.7
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 769.4
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 757.8
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 757.4
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 748.7
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 746.7
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 741.2
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 728.3
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 727.9
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 725.3
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 716.0
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 699.2
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 691.2
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 688.2
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 675.0
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 673.4
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 671.6
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 668.6
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 667.9
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 650.4
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 648.7
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 646.7
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 646.4
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 641.6
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 641.6
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 637.7
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 635.0
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 628.8
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 628.7
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 628.0
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 626.9
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 626.5
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 624.2
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 622.8
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 618.0
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 616.2
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 615.8
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 611.8
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 609.0
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 603.3
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 602.7
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 593.1
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 592.4
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 589.7
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 588.7
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 586.6
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 584.0
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 583.7
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 582.3
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 581.6
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 577.1
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 575.4
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 574.8
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 573.2
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 571.7
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 568.2
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 564.8
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 563.4
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 560.0
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 557.5
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 555.9
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 555.5
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 555.3
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 551.0
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 548.8
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 546.8
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 546.4
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 545.1
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 544.2
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 541.8
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 539.1
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 538.4
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 535.7
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 534.9
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 533.1
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 532.4
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 532.4
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 532.0
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 531.8
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 531.5
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 530.6
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 529.0
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 529.0
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 527.3
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 521.0
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 521.0
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 520.3
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 519.6
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 519.3
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 519.1
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 517.4
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 516.4
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 515.2
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 514.7
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 511.8
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 509.2
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 507.8
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 507.7
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 507.3
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 506.9
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 506.3
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 506.1
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 504.0
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 502.6
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 502.0
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 499.8
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 498.8
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 498.6
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 498.5
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 498.3
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 495.9
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 494.8
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 494.4
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 492.9
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 492.6
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 490.8
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 490.2
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 489.5
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 488.5
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 487.7
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 485.2
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 483.8
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 482.9
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 481.0
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 480.0
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 479.0
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 478.5
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 475.6
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 475.0
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 471.8
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 471.5
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 470.2
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 470.1
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 469.1
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 468.5
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 468.5
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 468.4
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 467.8
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 467.0
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 463.6
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 460.7
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 456.1
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 455.0
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 454.9
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 454.1
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 454.0
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 453.3
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 452.7
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 452.6
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 450.5
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 450.1
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 449.0
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 448.9
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 448.6
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 447.6
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 447.0
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 446.9
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 445.5
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 444.0
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 442.7
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 442.1
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 441.5
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 439.3
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 438.6
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 438.1
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 436.9
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 435.8
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 433.3
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 433.2
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 433.1
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 432.2
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 427.0
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 426.5
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 425.5
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 425.4
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 424.4
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 423.7
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 422.7
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 419.7
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 419.0
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 418.6
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 417.7
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 417.0
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 416.9
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 416.4
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 415.8
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 413.3
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 411.1
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 410.8
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 410.8
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 408.3
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 407.2
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 406.3
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 405.4
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 403.2
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 403.0
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 402.5
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 402.1
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 401.5
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 401.4
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 401.2
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 401.0
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 400.3
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 398.0
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 397.0
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 396.6
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 396.5
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 396.3
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 395.6
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 395.1
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 394.7
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 394.0
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 394.0
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 393.2
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 392.6
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 391.8
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 391.4
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 391.4
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 388.4
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 387.6
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 386.7
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 385.0
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 380.8
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 380.8
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 380.5
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 377.9
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 376.6
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 375.5
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 374.0
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 372.9
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 371.8
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 370.4
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 370.0
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 369.8
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 368.6
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 368.0
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 367.7
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 365.7
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 363.4
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 363.2
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 362.3
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 361.2
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 358.9
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 358.3
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 357.2
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 353.5
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 352.4
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 351.3
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 349.9
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 348.3
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 347.5
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 347.4
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 346.7
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 346.5
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 346.0
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 345.2
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 342.1
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 341.2
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 340.3
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 338.8
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 338.2
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 337.8
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 337.7
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 336.5
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 335.5
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 333.6
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 328.5
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 327.6
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 327.0
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 321.3
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 320.9
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 318.9
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 318.9
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 314.1
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 309.8
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 309.4
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 305.5
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 303.4
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 302.8
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 300.1
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 297.1
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 295.6
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 284.1
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 280.9
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 280.7
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 278.7
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 261.9
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 255.5
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 216.7
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

254.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 254.4
FF:10164-103B2 76 years, female 254.4

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

155.1
Pig sample Sample description nTPM
Caudate
nTPM: 155.1
Samples: 4

Max nTPM: 173.2
Min nTPM: 129.5
Sample A Female 149.6
Sample B Female 168.0
Sample C Male 173.2
Sample D Male 129.5

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