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TISSUE PRIMARY DATA RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Eye
Retina
Tissue methods
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:169.5 nTPM
GTEx:169.5 nTPM
FANTOM5:347.0 Scaled Tags Per Million
EYE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

169.5
GTEx sample id Sample description nTPM
Retina
Average nTPM: 169.5
Samples: 105

Max nTPM: 364.7
Min nTPM: 21.5
Std nTPM: 74.9
Median nTPM:
321_1 62 years, female 364.7
218_1 71 years, female 335.0
352_1 62 years, male 327.7
319_1 81 years, male 319.8
320_1 89 years, female 299.3
353_1 82 years, female 292.6
354_1 81 years, female 289.6
355_1 70 years, female 289.3
386_1 76 years, male 279.1
163_1 78 years, male 271.9
350_1 84 years, female 268.3
356_1 87 years, female 263.8
243_1 75 years, male 260.7
377_1 82 years, female 255.6
349_1 83 years, male 251.0
452_1 88 years, female 250.1
177_1 74 years, male 245.1
335_1 73 years, female 240.5
351_1 91 years, male 236.8
376_1 75 years, female 235.2
172_1 72 years, female 233.8
394_1 75 years, female 233.5
317_1 60 years, male 221.6
389_1 86 years, female 218.1
447_1 81 years, male 217.3
506_1 65 years, male 216.4
251_1 78 years, male 212.7
293_1 68 years, female 211.5
425_1 59 years, female 210.6
406_1 79 years, male 209.5
295_1 61 years, female 209.1
322_1 76 years, male 208.8
292_1 71 years, male 208.1
318_1 68 years, male 205.8
379_1 60 years, male 205.8
404_1 82 years, female 205.4
316_1 62 years, male 204.6
6_1 73 years, female 202.0
503_1 68 years, male 198.5
189_1 76 years, male 198.3
405_1 91 years, male 197.5
347_1 72 years, male 195.5
99_1 64 years, male 192.3
173_1 67 years, male 190.4
384_1 83 years, male 183.0
526_1 61 years, male 180.9
153_1 70 years, female 178.2
237_1 82 years, male 178.0
286_1 68 years, female 177.0
115_1 83 years, male 176.7
229_1 69 years, female 175.1
480_1 63 years, male 174.0
4_1 88 years, female 171.2
17_1 71 years, male 168.5
35_1 74 years, female 166.7
375_1 74 years, female 161.4
246_1 77 years, male 160.1
137_1 83 years, male 158.8
517_1 88 years, male 158.5
145_1 84 years, male 157.7
2_1 77 years, female 156.9
291_1 76 years, male 155.3
120_1 70 years, female 154.0
264_1 73 years, female 152.8
18_1 88 years, male 150.6
348_1 84 years, male 148.5
266_1 85 years, male 140.9
518_1 75 years, female 140.9
265_1 87 years, male 138.4
254_1 77 years, female 138.0
396_1 62 years, male 137.4
311_1 78 years, male 137.0
126_1 63 years, male 128.5
109_1 81 years, female 126.7
468_1 89 years, male 126.1
217_1 76 years, male 122.0
9_1 66 years, female 121.2
307_1 66 years, female 118.1
41_1 94 years, female 116.6
324_1 76 years, male 110.6
117_1 61 years, male 102.9
288_1 66 years, female 97.4
119_1 70 years, female 96.9
499_1 55 years, female 96.9
314_1 67 years, male 96.6
139_1 64 years, female 95.3
162_1 79 years, female 91.3
308_1 70 years, female 91.3
42_1 85 years, male 89.7
313_1 79 years, female 85.5
315_1 62 years, female 84.8
81_1 67 years, male 83.3
142_1 61 years, female 81.2
495_1 57 years, female 73.3
32_1 67 years, male 70.0
415_1 77 years, female 68.3
89_1 63 years, male 58.2
466_1 57 years, female 57.9
414_1 84 years, female 52.9
43_1 64 years, female 47.0
501_1 88 years, male 44.9
149_1 88 years, male 35.3
413_1 59 years, female 25.6
491_1 89 years, female 23.1
490_1 67 years, female 21.5
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

347.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 347.0
FF:10030-101E3 24-65 years, mixed 347.0

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