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  • TISSUE

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  • RPS5
TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
Tissue methods
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Endocrine cells: Medium
Enterocytes: Medium
Enterocytes - Microvilli: Not detected
Goblet cells: Medium
Paneth cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:853.5 nTPM
HPA:524.9 nTPM
GTEx:853.5 nTPM
FANTOM5:541.8 Scaled Tags Per Million
SMALL INTESTINE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA055878Antibody HPA061979
Endocrine cells Medium-
Enterocytes Medium-
Enterocytes - Microvilli Not detected-
Glandular cells -High
Goblet cells Medium-
Paneth cells Low-





SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

524.9
overview
Male, age 65
Small intestine sample 232
nTPM: 668.4
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 502.1
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 478.5
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 450.8

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

853.5
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 853.5
Samples: 207

Max nTPM: 1980.4
Min nTPM: 387.3
Std nTPM: 243.2
Median nTPM: 811.1
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 1980.4
GTEX-1RQED-2826-SM-HLJQK 60-69 years, male 1688.6
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 1565.7
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 1502.0
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 1495.9
GTEX-14PK6-1626-SM-6871I 70-79 years, female 1432.5
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 1430.0
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 1389.6
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 1385.8
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 1309.0
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 1279.6
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 1277.2
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 1275.5
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 1270.3
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 1263.2
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 1260.2
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 1227.9
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 1197.3
GTEX-183FY-1626-SM-793D8 20-29 years, male 1190.7
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 1180.8
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 1176.0
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 1160.4
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 1128.6
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 1112.2
GTEX-1HKZK-2226-SM-GA91V 40-49 years, male 1107.1
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 1106.6
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 1102.4
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 1100.0
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 1097.1
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 1096.4
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 1096.0
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 1085.6
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 1075.0
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 1067.7
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 1063.4
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 1050.6
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 1036.1
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 1030.2
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 1026.7
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 1026.4
GTEX-13O61-1326-SM-5KM31 60-69 years, male 1021.8
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 1019.6
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 1018.6
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 1015.1
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 1002.0
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 997.3
GTEX-14PKU-1626-SM-6871C 40-49 years, female 994.0
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 993.5
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 991.5
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 982.7
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 979.2
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 975.5
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 971.7
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 968.0
GTEX-1192X-2526-SM-59868 50-59 years, male 964.7
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 960.3
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 958.3
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 955.4
GTEX-1M5QR-2226-SM-HLJRV 40-49 years, male 945.6
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 944.9
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 940.5
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 934.5
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 931.5
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 929.9
GTEX-1HSGN-2126-SM-GA8ZB 40-49 years, female 923.3
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 920.9
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 917.1
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 916.1
GTEX-W5X1-1926-SM-GOQYX 40-49 years, female 915.7
GTEX-1PFEY-1326-SM-HK791 30-39 years, male 911.0
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 910.5
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 906.9
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 906.8
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 904.7
GTEX-117YX-0326-SM-5GICL 50-59 years, male 904.4
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 901.5
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 900.4
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 892.2
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 890.7
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 888.9
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 888.3
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 878.9
GTEX-1C475-1426-SM-793CH 40-49 years, female 876.0
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 874.9
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 869.4
GTEX-U8XE-2226-SM-HAUZQ 30-39 years, male 869.0
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 865.1
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 860.0
GTEX-1MCYP-1626-SM-HLJQ5 20-29 years, female 859.8
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 851.3
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 848.3
GTEX-13X6H-1826-SM-5O9D1 50-59 years, female 847.8
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 840.7
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 834.7
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 831.4
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 826.5
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 823.1
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 820.9
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 820.3
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 819.7
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 815.3
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 812.7
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 811.2
GTEX-WHPG-1826-SM-GNTAH 50-59 years, male 811.1
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 809.5
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 806.9
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 797.4
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 796.6
GTEX-1HCUA-1726-SM-GA8Z2 50-59 years, female 796.3
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 795.7
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 795.1
GTEX-XPT6-1026-SM-GOQYN 20-29 years, male 795.0
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 794.7
GTEX-YJ8A-2126-SM-GQ1C7 20-29 years, male 792.5
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 790.6
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 787.9
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 787.8
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 786.0
GTEX-13113-1226-SM-5EGHT 60-69 years, female 785.4
GTEX-13111-1426-SM-5DUW3 50-59 years, male 778.8
GTEX-ZPU1-1826-SM-GNTB3 40-49 years, male 770.5
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 770.4
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 769.3
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 763.2
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 762.1
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 761.4
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 761.1
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 759.6
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 757.1
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 756.9
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 748.1
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 747.8
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 747.0
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 743.6
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 735.3
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 735.1
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 734.5
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 733.3
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 727.7
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 727.2
GTEX-ZV7C-1426-SM-GNTB8 50-59 years, male 725.4
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 725.2
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 717.6
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 716.7
GTEX-144GM-1026-SM-5O9AZ 20-29 years, male 715.3
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 714.5
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 712.2
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 702.4
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 700.8
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 699.2
GTEX-X4LF-1326-SM-HLJSD 50-59 years, male 698.0
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 694.3
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 693.6
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 689.9
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 687.6
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 684.6
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 683.4
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 680.0
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 678.9
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 673.9
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 671.9
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 671.8
GTEX-1MA7W-0726-SM-HLJQU 20-29 years, female 671.3
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 667.3
GTEX-1HBPN-1926-SM-GA91H 50-59 years, male 665.9
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 665.2
GTEX-ZT9X-1026-SM-HLJS2 40-49 years, male 664.0
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 663.8
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 660.9
GTEX-YB5K-1126-SM-H6Q6O 40-49 years, female 657.6
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 657.5
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 657.3
GTEX-1NHNU-2526-SM-HK79M 50-59 years, male 656.0
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 652.7
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 652.0
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 649.6
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 641.7
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 635.9
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 619.7
GTEX-178AV-1226-SM-GOR11 40-49 years, male 616.3
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 614.6
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 613.0
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 588.4
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 587.4
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 583.3
GTEX-1S831-1526-SM-HLJQS 20-29 years, male 582.5
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 572.7
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 569.2
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 569.1
GTEX-X3Y1-1526-SM-H6Q6X 40-49 years, male 548.7
GTEX-1122O-1326-SM-5H11F 60-69 years, female 548.5
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 542.8
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 536.3
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 534.0
GTEX-111YS-1426-SM-5GID8 60-69 years, male 533.7
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 532.8
GTEX-YFCO-1326-SM-664NV 40-49 years, male 529.3
GTEX-14PN3-2026-SM-68729 60-69 years, female 525.1
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 521.6
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 518.3
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 503.7
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 490.0
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 482.0
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 479.9
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 474.2
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 404.9
GTEX-ZTSS-0926-SM-59865 40-49 years, male 387.3
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

541.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 541.8
FF:10024-101D6 15,40,85 years, mixed 541.8

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The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

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