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  • YTHDC1
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:43.7 nTPM
HPA Brain:40.2 nTPM
GTEx:43.7 nTPM
FANTOM5:109.4 Scaled Tags Per Million
Pig:68.5 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

40.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 36.0
2048 Male, age 55, midline 40.7
2816 Male, age 47, midline 36.0
2194 Female, age 79, both hemispheres 34.9
2565 Male, age 75, midline 34.3
1981 Female, age 72, midline 34.0
Cervical spinal cord, dorsal horn
nTPM: 35.2
2296 Male, age 66, both hemispheres 42.2
2173 Female, age 72, unknown 39.7
2069 Male, age 47, both hemispheres 35.2
1877 Male, age 55, unknown 34.0
2297 Male, age 75, both hemispheres 30.9
2721 Male, age 90, both hemispheres 29.1
Cervical spinal cord, ventral horn
nTPM: 40.2
2480 Male, age 75, both hemispheres 49.4
2809 Male, age 90, both hemispheres 46.3
2295 Male, age 66, both hemispheres 37.8
2820 Female, age 79, both hemispheres 37.2
2098 Female, age 72, unknown 36.2
2068 Male, age 55, unknown 34.2

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

43.7
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 43.7
Samples: 204

Max nTPM: 85.4
Min nTPM: 27.6
Std nTPM: 9.1
Median nTPM: 41.9
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 85.4
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 72.5
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 71.7
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 67.0
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 64.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 63.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 62.6
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 62.6
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 62.5
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 61.6
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 61.1
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 60.7
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 60.0
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 59.2
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 59.0
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 58.8
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 57.9
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 57.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 56.8
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 56.6
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 55.1
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 55.0
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 54.8
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 54.7
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 54.4
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 53.9
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 53.6
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 53.6
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 53.5
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 53.0
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 52.8
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 51.9
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 51.9
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 51.6
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 51.6
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 51.5
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 51.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 51.1
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 51.0
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 50.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 50.5
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 50.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 50.3
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 50.3
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 49.9
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 49.8
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 49.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 49.7
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 49.7
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 49.6
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 49.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 49.0
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 48.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 48.3
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 48.3
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 48.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 47.7
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 47.6
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 47.3
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 47.1
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 47.0
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 47.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 46.9
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 46.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 46.6
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 46.6
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 46.5
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 46.3
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 46.3
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 46.3
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 46.1
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 46.1
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 45.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 45.8
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 45.8
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 45.5
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 45.3
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 45.2
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 45.1
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 44.9
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 44.8
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 44.6
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 44.6
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 44.4
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 44.3
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 44.0
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 43.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 43.2
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 43.2
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 43.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 42.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 42.9
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 42.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 42.7
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 42.6
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 42.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 42.2
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 42.2
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 42.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 42.1
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 42.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 41.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 41.9
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 41.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 41.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 41.6
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 41.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 41.5
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 41.3
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 41.2
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 41.1
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 41.0
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 41.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 41.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 41.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 40.9
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 40.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 40.5
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 40.4
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 40.4
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 40.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 40.2
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 40.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 40.1
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 40.0
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 40.0
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 39.9
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 39.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 39.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 39.5
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 39.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 39.3
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 39.3
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 39.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 38.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 38.6
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 38.6
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 38.5
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 38.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 38.3
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 38.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 38.1
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 38.0
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 37.9
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 37.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 37.9
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 37.4
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 37.4
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 37.4
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 37.3
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 37.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 37.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 37.3
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 37.2
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 37.1
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 37.0
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 36.7
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 36.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 36.7
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 36.4
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 36.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 36.1
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 36.1
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 36.0
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 36.0
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 35.9
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 35.7
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 35.6
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 35.5
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 35.4
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 35.3
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 35.3
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 35.0
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 34.9
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 34.9
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 34.8
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 34.5
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 34.4
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 34.2
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 34.1
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 33.7
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 33.7
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 33.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 33.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 33.4
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 33.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 32.9
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 32.8
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 32.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 32.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 32.4
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 31.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 31.8
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 31.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 31.2
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 31.2
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 30.7
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 30.4
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 30.0
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 29.5
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 29.2
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 29.1
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 28.0
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 27.6
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

109.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 109.4
FF:10159-103A6 76 years, female 118.2
FF:10181-103D1 60 years, female 100.6

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

68.5
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 68.5
Samples: 4

Max nTPM: 75.0
Min nTPM: 62.6
Sample A Female 63.8
Sample B Female 72.7
Sample C Male 62.6
Sample D Male 75.0
Ventral spinal cord
nTPM: 67.0
Samples: 4

Max nTPM: 77.6
Min nTPM: 62.2
Sample A Female 62.2
Sample B Female 63.8
Sample C Male 64.2
Sample D Male 77.6

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