A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
53.6
nTPM
Monaco:
52.9
nTPM
Schmiedel:
75.5
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
53.6
HPA sample
nTPM
Memory B-cell nTPM: 49.8
Samples: 6
Max nTPM: 67.6
Min nTPM: 33.4
P10809_1017
33.4
P10809_1025
59.9
P10809_1044
67.6
P10809_1063
44.0
P10809_1092
47.3
P10809_1105
46.9
Naive B-cell nTPM: 53.6
Samples: 6
Max nTPM: 91.1
Min nTPM: 26.7
P10809_1011
26.7
P10809_1029
48.7
P10809_1048
91.1
P10809_1067
53.2
P10809_1091
50.7
P10809_1104
51.4
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
52.9
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 40.2
Samples: 4
Max nTPM: 52.6
Min nTPM: 28.8
RHH5310_R3677
47.1
RHH5218_R3590
32.3
RHH5247_R3619
52.6
RHH5276_R3648
28.8
Naive B-cell nTPM: 45.6
Samples: 4
Max nTPM: 70.5
Min nTPM: 27.0
RHH5308_R3675
46.9
RHH5216_R3588
70.5
RHH5245_R3617
27.0
RHH5274_R3646
37.8
Non-switched memory B-cell nTPM: 50.7
Samples: 4
Max nTPM: 58.3
Min nTPM: 43.9
RHH5309_R3676
53.9
RHH5217_R3589
43.9
RHH5246_R3618
58.3
RHH5275_R3647
46.5
Plasmablast nTPM: 47.9
Samples: 4
Max nTPM: 57.1
Min nTPM: 32.0
RHH5312_R3679
51.3
RHH5220_R3592
57.1
RHH5249_R3621
51.1
RHH5278_R3650
32.0
Switched memory B-cell nTPM: 52.9
Samples: 4
Max nTPM: 74.1
Min nTPM: 35.7
RHH5311_R3678
74.1
RHH5219_R3591
61.3
RHH5248_R3620
35.7
RHH5277_R3649
40.4
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
75.5
Schmiedel sample id
TPM
Naive B-cell TPM: 75.5
Samples: 91
Max TPM: 134.1
Min TPM: 51.4
B_CELL_NAIVE_1
134.1
B_CELL_NAIVE_2
133.5
B_CELL_NAIVE_3
119.2
B_CELL_NAIVE_4
111.9
B_CELL_NAIVE_5
111.4
B_CELL_NAIVE_6
110.7
B_CELL_NAIVE_7
106.1
B_CELL_NAIVE_8
105.9
B_CELL_NAIVE_9
101.2
B_CELL_NAIVE_10
100.0
B_CELL_NAIVE_11
97.8
B_CELL_NAIVE_12
96.7
B_CELL_NAIVE_13
92.7
B_CELL_NAIVE_14
92.0
B_CELL_NAIVE_15
90.3
B_CELL_NAIVE_16
88.3
B_CELL_NAIVE_17
88.1
B_CELL_NAIVE_18
87.9
B_CELL_NAIVE_19
86.3
B_CELL_NAIVE_20
85.7
B_CELL_NAIVE_21
84.6
B_CELL_NAIVE_22
84.1
B_CELL_NAIVE_23
83.4
B_CELL_NAIVE_24
79.8
B_CELL_NAIVE_25
79.5
B_CELL_NAIVE_26
79.0
B_CELL_NAIVE_27
78.9
B_CELL_NAIVE_28
78.4
B_CELL_NAIVE_29
77.9
B_CELL_NAIVE_30
77.7
B_CELL_NAIVE_31
77.3
B_CELL_NAIVE_32
77.2
B_CELL_NAIVE_33
76.9
B_CELL_NAIVE_34
76.8
B_CELL_NAIVE_35
76.5
B_CELL_NAIVE_36
75.9
B_CELL_NAIVE_37
75.1
B_CELL_NAIVE_38
73.9
B_CELL_NAIVE_39
73.7
B_CELL_NAIVE_40
73.5
B_CELL_NAIVE_41
73.0
B_CELL_NAIVE_42
72.5
B_CELL_NAIVE_43
72.4
B_CELL_NAIVE_44
72.2
B_CELL_NAIVE_45
71.8
B_CELL_NAIVE_46
71.8
B_CELL_NAIVE_47
71.3
B_CELL_NAIVE_48
71.2
B_CELL_NAIVE_49
70.8
B_CELL_NAIVE_50
70.6
B_CELL_NAIVE_51
69.9
B_CELL_NAIVE_52
69.8
B_CELL_NAIVE_53
69.7
B_CELL_NAIVE_54
69.3
B_CELL_NAIVE_55
69.2
B_CELL_NAIVE_56
69.1
B_CELL_NAIVE_57
68.2
B_CELL_NAIVE_58
67.0
B_CELL_NAIVE_59
66.6
B_CELL_NAIVE_60
65.7
B_CELL_NAIVE_61
65.0
B_CELL_NAIVE_62
64.6
B_CELL_NAIVE_63
64.2
B_CELL_NAIVE_64
64.2
B_CELL_NAIVE_65
64.1
B_CELL_NAIVE_66
64.1
B_CELL_NAIVE_67
63.9
B_CELL_NAIVE_68
63.3
B_CELL_NAIVE_69
63.1
B_CELL_NAIVE_70
63.1
B_CELL_NAIVE_71
62.8
B_CELL_NAIVE_72
62.0
B_CELL_NAIVE_73
61.5
B_CELL_NAIVE_74
61.2
B_CELL_NAIVE_75
61.2
B_CELL_NAIVE_76
61.0
B_CELL_NAIVE_77
60.4
B_CELL_NAIVE_78
60.2
B_CELL_NAIVE_79
59.7
B_CELL_NAIVE_80
59.7
B_CELL_NAIVE_81
58.6
B_CELL_NAIVE_82
58.2
B_CELL_NAIVE_83
58.1
B_CELL_NAIVE_84
57.3
B_CELL_NAIVE_85
56.9
B_CELL_NAIVE_86
56.7
B_CELL_NAIVE_87
56.7
B_CELL_NAIVE_88
56.2
B_CELL_NAIVE_89
56.0
B_CELL_NAIVE_90
54.3
B_CELL_NAIVE_91
51.4
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The Human Protein Atlas project is funded
