A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
68.1
nTPM
Monaco:
85.9
nTPM
Schmiedel:
86.0
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
68.1
HPA sample
nTPM
Classical monocyte nTPM: 50.7
Samples: 6
Max nTPM: 61.7
Min nTPM: 36.7
P10809_1003
36.7
P10809_1020
61.7
P10809_1039
57.2
P10809_1058
44.4
P10809_1080
51.4
P10809_1107
53.0
Intermediate monocyte nTPM: 65.3
Samples: 6
Max nTPM: 84.0
Min nTPM: 46.3
P10809_1004
46.3
P10809_1023
63.8
P10809_1042
67.0
P10809_1061
75.6
P10809_1081
54.9
P10809_1108
84.0
Non-classical monocyte nTPM: 68.1
Samples: 5
Max nTPM: 82.7
Min nTPM: 53.5
P10809_1005
53.5
P10809_1053
63.6
P10809_1072
82.7
P10809_1082
61.1
P10809_1109
79.6
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
85.9
Monaco sample
nTPM
Classical monocyte nTPM: 67.6
Samples: 4
Max nTPM: 76.3
Min nTPM: 55.1
RHH5313_R3680
63.5
RHH5221_R3593
75.5
RHH5250_R3622
55.1
RHH5279_R3651
76.3
Intermediate monocyte nTPM: 75.2
Samples: 4
Max nTPM: 86.7
Min nTPM: 63.9
RHH5314_R3681
74.9
RHH5222_R3594
86.7
RHH5251_R3623
63.9
RHH5280_R3652
75.3
Non-classical monocyte nTPM: 85.9
Samples: 4
Max nTPM: 99.2
Min nTPM: 72.5
RHH5315_R3682
72.5
RHH5223_R3595
96.7
RHH5252_R3624
75.1
RHH5281_R3653
99.2
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
86.0
Schmiedel sample id
TPM
Classical monocyte TPM: 54.6
Samples: 91
Max TPM: 75.9
Min TPM: 37.7
MONOCYTES_1
75.9
MONOCYTES_2
75.8
MONOCYTES_3
71.0
MONOCYTES_4
70.7
MONOCYTES_5
70.0
MONOCYTES_6
68.9
MONOCYTES_7
68.4
MONOCYTES_8
67.9
MONOCYTES_9
66.4
MONOCYTES_10
65.5
MONOCYTES_11
64.5
MONOCYTES_12
63.2
MONOCYTES_13
63.1
MONOCYTES_14
62.2
MONOCYTES_15
61.8
MONOCYTES_16
61.8
MONOCYTES_17
61.6
MONOCYTES_18
61.4
MONOCYTES_19
61.2
MONOCYTES_20
60.5
MONOCYTES_21
60.4
MONOCYTES_22
60.3
MONOCYTES_23
60.2
MONOCYTES_24
59.9
MONOCYTES_25
59.8
MONOCYTES_26
59.7
MONOCYTES_27
59.6
MONOCYTES_28
59.3
MONOCYTES_29
59.2
MONOCYTES_30
58.4
MONOCYTES_31
58.1
MONOCYTES_32
57.7
MONOCYTES_33
57.7
MONOCYTES_34
57.2
MONOCYTES_35
57.2
MONOCYTES_36
56.6
MONOCYTES_37
56.1
MONOCYTES_38
55.9
MONOCYTES_39
55.8
MONOCYTES_40
55.7
MONOCYTES_41
55.6
MONOCYTES_42
55.1
MONOCYTES_43
54.7
MONOCYTES_44
54.7
MONOCYTES_45
54.3
MONOCYTES_46
54.0
MONOCYTES_47
53.6
MONOCYTES_48
52.3
MONOCYTES_49
52.3
MONOCYTES_50
52.3
MONOCYTES_51
52.2
MONOCYTES_52
51.7
MONOCYTES_53
51.5
MONOCYTES_54
51.5
MONOCYTES_55
50.9
MONOCYTES_56
50.8
MONOCYTES_57
50.5
MONOCYTES_58
50.4
MONOCYTES_59
50.1
MONOCYTES_60
50.0
MONOCYTES_61
50.0
MONOCYTES_62
49.9
MONOCYTES_63
49.8
MONOCYTES_64
49.7
MONOCYTES_65
49.7
MONOCYTES_66
49.5
MONOCYTES_67
49.5
MONOCYTES_68
49.2
MONOCYTES_69
48.2
MONOCYTES_70
48.0
MONOCYTES_71
47.8
MONOCYTES_72
47.8
MONOCYTES_73
47.3
MONOCYTES_74
47.0
MONOCYTES_75
46.8
MONOCYTES_76
46.7
MONOCYTES_77
46.3
MONOCYTES_78
46.2
MONOCYTES_79
45.9
MONOCYTES_80
45.6
MONOCYTES_81
45.6
MONOCYTES_82
45.2
MONOCYTES_83
44.5
MONOCYTES_84
44.2
MONOCYTES_85
44.0
MONOCYTES_86
43.6
MONOCYTES_87
42.7
MONOCYTES_88
42.2
MONOCYTES_89
41.0
MONOCYTES_90
39.4
MONOCYTES_91
37.7
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Non-classical monocyte TPM: 86.1
Samples: 90
Max TPM: 138.6
Min TPM: 42.9
M2_1
138.6
M2_2
122.4
M2_3
116.4
M2_4
114.0
M2_5
112.4
M2_6
111.6
M2_7
111.1
M2_8
110.7
M2_9
109.2
M2_10
108.8
M2_11
108.7
M2_12
108.7
M2_13
107.4
M2_14
104.7
M2_15
103.6
M2_16
100.9
M2_17
100.8
M2_18
100.8
M2_19
98.8
M2_20
97.0
M2_21
96.2
M2_22
95.1
M2_23
94.7
M2_24
94.6
M2_25
94.2
M2_26
93.9
M2_27
93.7
M2_28
93.4
M2_29
92.1
M2_30
91.7
M2_31
91.5
M2_32
91.2
M2_33
90.5
M2_34
89.9
M2_35
88.3
M2_36
88.1
M2_37
87.0
M2_38
86.5
M2_39
86.5
M2_40
85.8
M2_41
85.5
M2_42
85.4
M2_43
84.7
M2_44
84.5
M2_45
84.0
M2_46
83.8
M2_47
83.3
M2_48
82.9
M2_49
82.5
M2_50
82.2
M2_51
82.0
M2_52
81.8
M2_53
80.0
M2_54
79.7
M2_55
79.5
M2_56
79.3
M2_57
79.2
M2_58
79.1
M2_59
78.2
M2_60
77.2
M2_61
77.2
M2_62
77.0
M2_63
76.0
M2_64
75.6
M2_65
75.5
M2_66
75.3
M2_67
75.3
M2_68
74.6
M2_69
74.3
M2_70
73.8
M2_71
73.5
M2_72
73.1
M2_73
72.9
M2_74
72.1
M2_75
71.5
M2_76
71.0
M2_77
70.2
M2_78
69.9
M2_79
69.9
M2_80
69.8
M2_81
69.4
M2_82
69.0
M2_83
67.2
M2_84
67.1
M2_85
66.0
M2_86
65.7
M2_87
65.2
M2_88
64.2
M2_89
53.4
M2_90
42.9
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