A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
15.7
nTPM
Monaco:
147.7
nTPM
Schmiedel:
125.6
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
15.7
HPA sample
nTPM
NK-cell nTPM: 15.7
Samples: 6
Max nTPM: 25.3
Min nTPM: 6.8
P10809_1013
15.1
P10809_1033
13.0
P10809_1052
16.9
P10809_1071
6.8
P10809_1093
25.3
P10809_1103
17.1
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
147.7
Monaco sample
nTPM
NK-cell nTPM: 147.7
Samples: 4
Max nTPM: 202.5
Min nTPM: 95.2
RHH5316_R3683
95.2
RHH5224_R3596
202.5
RHH5253_R3625
158.5
RHH5282_R3654
134.6
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
125.6
Schmiedel sample id
TPM
NK-cell TPM: 125.6
Samples: 90
Max TPM: 224.2
Min TPM: 79.7
NK_1
224.2
NK_2
188.1
NK_3
169.9
NK_4
169.1
NK_5
167.5
NK_6
167.5
NK_7
166.8
NK_8
161.5
NK_9
158.5
NK_10
158.5
NK_11
154.0
NK_12
150.7
NK_13
150.2
NK_14
150.0
NK_15
149.8
NK_16
149.6
NK_17
145.6
NK_18
145.3
NK_19
143.8
NK_20
142.7
NK_21
140.0
NK_22
139.9
NK_23
139.2
NK_24
138.0
NK_25
137.9
NK_26
135.2
NK_27
134.8
NK_28
133.2
NK_29
132.2
NK_30
131.4
NK_31
130.1
NK_32
129.7
NK_33
129.0
NK_34
128.5
NK_35
128.5
NK_36
128.0
NK_37
127.8
NK_38
127.8
NK_39
127.4
NK_40
126.5
NK_41
126.4
NK_42
126.1
NK_43
125.8
NK_44
125.1
NK_45
125.1
NK_46
124.9
NK_47
124.8
NK_48
124.1
NK_49
123.7
NK_50
123.4
NK_51
123.4
NK_52
121.9
NK_53
121.8
NK_54
119.4
NK_55
119.1
NK_56
118.8
NK_57
115.8
NK_58
115.0
NK_59
114.6
NK_60
113.7
NK_61
113.3
NK_62
112.6
NK_63
112.2
NK_64
111.4
NK_65
111.1
NK_66
111.0
NK_67
110.4
NK_68
110.2
NK_69
108.0
NK_70
107.8
NK_71
107.7
NK_72
105.5
NK_73
105.4
NK_74
105.1
NK_75
104.9
NK_76
101.2
NK_77
100.0
NK_78
99.2
NK_79
98.8
NK_80
97.4
NK_81
95.7
NK_82
93.7
NK_83
93.3
NK_84
88.9
NK_85
88.7
NK_86
85.7
NK_87
85.5
NK_88
82.3
NK_89
82.1
NK_90
79.7
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