A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
249.2
nTPM
Monaco:
1309.4
nTPM
Schmiedel:
745.2
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
249.2
HPA sample
nTPM
Classical monocyte nTPM: 249.2
Samples: 6
Max nTPM: 563.6
Min nTPM: 154.9
P10809_1003
563.6
P10809_1020
211.0
P10809_1039
204.3
P10809_1058
154.9
P10809_1080
187.4
P10809_1107
174.0
Intermediate monocyte nTPM: 122.2
Samples: 6
Max nTPM: 171.0
Min nTPM: 76.3
P10809_1004
171.0
P10809_1023
118.1
P10809_1042
121.0
P10809_1061
166.3
P10809_1081
76.3
P10809_1108
80.5
Non-classical monocyte nTPM: 94.8
Samples: 5
Max nTPM: 143.9
Min nTPM: 46.6
P10809_1005
143.9
P10809_1053
109.9
P10809_1072
99.0
P10809_1082
46.6
P10809_1109
74.8
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1309.4
Monaco sample
nTPM
Classical monocyte nTPM: 1309.4
Samples: 4
Max nTPM: 1411.7
Min nTPM: 1119.7
RHH5313_R3680
1411.7
RHH5221_R3593
1345.0
RHH5250_R3622
1361.0
RHH5279_R3651
1119.7
Intermediate monocyte nTPM: 674.0
Samples: 4
Max nTPM: 724.2
Min nTPM: 650.7
RHH5314_R3681
660.5
RHH5222_R3594
724.2
RHH5251_R3623
660.6
RHH5280_R3652
650.7
Non-classical monocyte nTPM: 528.2
Samples: 4
Max nTPM: 559.6
Min nTPM: 476.4
RHH5315_R3682
559.6
RHH5223_R3595
476.4
RHH5252_R3624
549.4
RHH5281_R3653
527.3
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
745.2
Schmiedel sample id
TPM
Classical monocyte TPM: 745.2
Samples: 91
Max TPM: 924.6
Min TPM: 557.5
MONOCYTES_1
924.6
MONOCYTES_2
902.6
MONOCYTES_3
886.1
MONOCYTES_4
870.1
MONOCYTES_5
864.6
MONOCYTES_6
864.4
MONOCYTES_7
842.1
MONOCYTES_8
842.1
MONOCYTES_9
841.5
MONOCYTES_10
833.9
MONOCYTES_11
832.2
MONOCYTES_12
829.1
MONOCYTES_13
825.4
MONOCYTES_14
824.0
MONOCYTES_15
812.8
MONOCYTES_16
807.8
MONOCYTES_17
806.2
MONOCYTES_18
804.5
MONOCYTES_19
804.2
MONOCYTES_20
803.7
MONOCYTES_21
802.6
MONOCYTES_22
802.5
MONOCYTES_23
801.1
MONOCYTES_24
800.9
MONOCYTES_25
795.7
MONOCYTES_26
794.1
MONOCYTES_27
790.5
MONOCYTES_28
787.8
MONOCYTES_29
787.6
MONOCYTES_30
785.3
MONOCYTES_31
783.5
MONOCYTES_32
783.4
MONOCYTES_33
783.1
MONOCYTES_34
782.4
MONOCYTES_35
781.7
MONOCYTES_36
780.4
MONOCYTES_37
774.6
MONOCYTES_38
772.7
MONOCYTES_39
769.8
MONOCYTES_40
767.5
MONOCYTES_41
765.5
MONOCYTES_42
764.6
MONOCYTES_43
763.9
MONOCYTES_44
759.1
MONOCYTES_45
758.7
MONOCYTES_46
757.2
MONOCYTES_47
753.5
MONOCYTES_48
752.8
MONOCYTES_49
750.7
MONOCYTES_50
748.2
MONOCYTES_51
745.7
MONOCYTES_52
743.6
MONOCYTES_53
739.5
MONOCYTES_54
738.0
MONOCYTES_55
736.0
MONOCYTES_56
732.3
MONOCYTES_57
728.6
MONOCYTES_58
722.3
MONOCYTES_59
712.6
MONOCYTES_60
712.2
MONOCYTES_61
710.9
MONOCYTES_62
704.0
MONOCYTES_63
703.0
MONOCYTES_64
699.5
MONOCYTES_65
698.5
MONOCYTES_66
697.1
MONOCYTES_67
696.2
MONOCYTES_68
694.8
MONOCYTES_69
691.2
MONOCYTES_70
686.7
MONOCYTES_71
682.7
MONOCYTES_72
682.6
MONOCYTES_73
679.5
MONOCYTES_74
677.0
MONOCYTES_75
675.3
MONOCYTES_76
674.3
MONOCYTES_77
669.6
MONOCYTES_78
656.3
MONOCYTES_79
641.5
MONOCYTES_80
638.2
MONOCYTES_81
638.1
MONOCYTES_82
631.8
MONOCYTES_83
630.0
MONOCYTES_84
628.7
MONOCYTES_85
628.6
MONOCYTES_86
616.0
MONOCYTES_87
613.5
MONOCYTES_88
600.9
MONOCYTES_89
594.2
MONOCYTES_90
578.8
MONOCYTES_91
557.5
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Non-classical monocyte TPM: 309.1
Samples: 90
Max TPM: 382.3
Min TPM: 211.3
M2_1
382.3
M2_2
378.6
M2_3
377.4
M2_4
370.8
M2_5
370.7
M2_6
364.5
M2_7
363.9
M2_8
363.2
M2_9
360.3
M2_10
354.1
M2_11
353.3
M2_12
353.1
M2_13
349.2
M2_14
346.1
M2_15
344.4
M2_16
343.0
M2_17
342.4
M2_18
339.2
M2_19
338.4
M2_20
335.2
M2_21
335.2
M2_22
334.0
M2_23
334.0
M2_24
333.7
M2_25
333.7
M2_26
329.5
M2_27
325.6
M2_28
325.3
M2_29
325.0
M2_30
323.0
M2_31
322.6
M2_32
322.3
M2_33
318.7
M2_34
316.8
M2_35
316.6
M2_36
316.6
M2_37
316.0
M2_38
315.8
M2_39
315.2
M2_40
314.1
M2_41
313.9
M2_42
313.6
M2_43
311.8
M2_44
311.2
M2_45
310.9
M2_46
310.7
M2_47
308.9
M2_48
308.8
M2_49
308.1
M2_50
307.0
M2_51
302.1
M2_52
301.2
M2_53
300.2
M2_54
300.0
M2_55
299.6
M2_56
299.2
M2_57
298.9
M2_58
298.5
M2_59
298.2
M2_60
295.9
M2_61
292.1
M2_62
291.7
M2_63
289.1
M2_64
287.8
M2_65
287.0
M2_66
287.0
M2_67
286.7
M2_68
284.3
M2_69
283.1
M2_70
281.2
M2_71
278.3
M2_72
278.2
M2_73
278.2
M2_74
278.0
M2_75
275.8
M2_76
273.1
M2_77
272.8
M2_78
272.3
M2_79
272.1
M2_80
272.0
M2_81
267.9
M2_82
265.8
M2_83
260.0
M2_84
257.8
M2_85
256.1
M2_86
253.3
M2_87
253.3
M2_88
238.9
M2_89
235.5
M2_90
211.3
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