MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:73.7 nTPM
HPA Brain:54.6 nTPM
GTEx:73.7 nTPM
FANTOM5:37.7 Scaled Tags Per Million
Mouse:183.2 nTPM
Allen mouse:9.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 54.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 46.8
2019 Male, age 18, unknown 63.1
2411 Female, age 72, unknown 51.6
1827 Male, age 72, unknown 50.9
2666 Male, age 74, left hemisphere 48.9
1870 Female, age 42, unknown 47.3
2828 Female, age 72, unknown 45.4
1830 Male, age 51, unknown 42.4
1833 Male, age 53, unknown 41.8
2219 Male, age 76, both hemispheres 41.1
2586 Male, age 75, left hemisphere 35.7
Dorsal raphe nucleus
nTPM: 51.9
2298 Female, age 72, unknown 64.7
2750 Male, age 76, both hemispheres 54.4
1828 Male, age 53, unknown 48.4
2047 Male, age 72, unknown 47.9
2016 Female, age 72, unknown 44.2
Inferior colliculus
nTPM: 45.9
2097 Female, age 72, unknown 54.6
1890 Male, age 53, unknown 46.1
1848 Female, age 42, unknown 45.5
2849 Male, age 72, unknown 37.5
Median raphe nucleus
nTPM: 54.6
2220 Male, age 76, midline 54.6
Periaquaductal grey, anterior
nTPM: 48.4
2502 Female, age 75, unknown 53.0
1947 Male, age 18, unknown 47.7
1795 Male, age 51, unknown 44.5
Periaquaductal grey, dorsal
nTPM: 42.6
1840 Male, age 53, unknown 44.2
2464 Female, age 72, unknown 43.7
1831 Male, age 72, unknown 41.8
2850 Male, age 76, both hemispheres 40.6
Periaquaductal grey, lateral
nTPM: 46.3
2272 Male, age 74, both hemispheres 54.6
2140 Male, age 76, both hemispheres 45.6
2053 Male, age 18, unknown 38.7
Pretectal area
nTPM: 53.8
1817 Female, age 42, unknown 66.4
2007 Male, age 72, unknown 65.7
1816 Male, age 51, unknown 62.5
1944 Female, age 72, unknown 59.9
2273 Male, age 74, both hemispheres 59.9
1815 Male, age 53, unknown 55.3
2224 Female, age 72, unknown 50.9
2667 Female, age 75, unknown 50.4
2316 Male, age 76, right hemisphere 43.7
2825 Male, age 18, unknown 38.9
2407 Male, age 75, both hemispheres 37.6
Red nucleus
nTPM: 50.8
2785 Male, age 18, unknown 58.3
1821 Female, age 72, unknown 58.1
1865 Male, age 51, unknown 57.7
1904 Male, age 53, unknown 57.0
1954 Female, age 42, unknown 51.7
2725 Female, age 75, unknown 51.7
2769 Male, age 72, unknown 50.7
2503 Female, age 72, unknown 50.2
2227 Male, age 72, unknown 48.1
2823 Male, age 76, right hemisphere 43.6
2588 Male, age 74, left hemisphere 42.6
2584 Male, age 75, left hemisphere 39.7
Substantia nigra
nTPM: 53.9
1916 Female, age 42, unknown 75.3
1851 Male, age 51, unknown 65.0
1889 Female, age 72, unknown 62.7
1941 Male, age 53, unknown 57.1
2241 Male, age 72, unknown 53.4
2699 Male, age 18, unknown 50.6
2665 Male, age 74, both hemispheres 46.9
2409 Female, age 72, unknown 45.1
2590 Female, age 75, unknown 43.8
2583 Male, age 75, right hemisphere 38.5
Superior colliculus
nTPM: 48.0
2668 Female, age 75, unknown 53.6
2587 Male, age 74, left hemisphere 52.5
2261 Male, age 18, unknown 51.4
1796 Male, age 53, unknown 50.9
2087 Female, age 72, unknown 50.5
1895 Male, age 76, right hemisphere 48.2
1913 Female, age 42, unknown 47.9
1995 Male, age 72, unknown 47.7
1839 Male, age 51, unknown 39.2
2664 Male, age 75, both hemispheres 38.1
Ventral tegmental area
nTPM: 53.1
2410 Female, age 72, unknown 63.4
2218 Male, age 76, both hemispheres 59.2
1915 Female, age 42, unknown 58.0
2223 Female, age 72, unknown 49.3
1942 Male, age 51, unknown 45.4
2021 Male, age 53, unknown 43.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 73.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 73.7
Samples: 183

Max nTPM: 140.8
Min nTPM: 39.4
Std nTPM: 14.4
Median nTPM: 71.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 140.8
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 123.8
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 119.5
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 114.8
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 111.8
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 108.1
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 106.5
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 102.8
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 99.0
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 98.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 95.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 37.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 37.7
FF:10158-103A5 76 years, female 37.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 183.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 183.2
Samples: 4

Max nTPM: 193.1
Min nTPM: 167.8
Sample A Male 192.6
Sample B Male 179.3
Sample C Female 167.8
Sample D Female 193.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 9.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.4
68637694 Antisense, RP_050126_01_D07, Mouse strain C57BL/6J (56 days, male) 9.4

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