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BETA
  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • IMMUNE

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  • EVOLUTION

  • CD59
EVOLUTIONARY HIPPOCAMPAL FORMATION Show tissue menu
BRAIN41 EYE4 ENDOCRINE TISSUES5 RESPIRATORY SYSTEM6 PROXIMAL DIGESTIVE TRACT5 GASTROINTESTINAL TRACT11 LIVER & GALLBLADDER4 PANCREAS1 KIDNEY & URINARY BLADDER4 MALE REPRODUCTIVE SYSTEM11 BREAST & FEMALE REPRODUCTIVE SYSTEM10 MUSCLE & VASCULAR TISSUE12 CONNECTIVE & SOFT TISSUE15 SKIN4 BONE MARROW & LYMPHOID TISSUES6
Select an organ to show its tissues
AMYGDALA BASAL GANGLIA CAUDATE NUCLEUS CAUDATE PUTAMEN CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS CINGULATE CORTEX CORPUS CALLOSUM DORSAL HIPPOCAMPUS DORSAL ROOT GANGLION DORSAL SPINAL CORD ENTORHINAL CORTEX FRONTAL CORTEX
HIPPOCAMPAL FORMATION HYPOTHALAMUS INSULAR CORTEX MEDULLA OBLONGATA MIDBRAIN MOTOR CORTEX OCCIPITAL CORTEX OLFACTORY BULB PERIAQUEDUCTAL GRAY PONS PREFRONTAL CORTEX PUTAMEN RETROSPLENIAL AND CINGULATE CORTEX RETROSPLENIAL CORTEX
SEPTAL AREA SEPTUM SOMATOSENSORY CORTEX SPINAL CORD SUBICULUM SUBSTANTIA NIGRA SUPERIOR COLLICULI TEMPORAL CORTEX THALAMUS VENTRAL FOREBRAIN VENTRAL HIPPOCAMPUS VENTRAL PALLIDUM VENTRAL SPINAL CORD
CORNEA HARDERIAN GLAND LENS RETINA
ADRENAL GLAND PARATHYROID GLAND PINEAL GLAND PITUITARY GLAND THYROID GLAND
BRONCHUS LARYNX LUNG NASOPHARYNX OLFACTORY EPITHELIUM TRACHEA
ESOPHAGUS LIP ORAL MUCOSA SALIVARY GLAND TONGUE
CECUM COLON DUODENUM ILEUM JEJUNUM RECTUM SMALL INTESTINE STOMACH STOMACH (LOWER) STOMACH (MIDDLE) STOMACH (UPPER)
GALLBLADDER LIVER LIVER (LOBE 1) LIVER (LOBE 4)
PANCREAS
KIDNEY KIDNEY (CORTEX) KIDNEY (MEDULLA) URINARY BLADDER
BULBOURETHRAL GLAND DUCTUS DEFERENS EPIDIDYMIS MALE PREPUTIAL GLAND PENIS PROSTATE PROSTATE (ANTERIOR) PROSTATE (VENTRAL) SEMINAL VESICLE TESTIS URETHRAL GLAND
BREAST CERVIX CLITORIS ENDOMETRIUM FALLOPIAN TUBE FEMALE PREPUTIAL GLAND OVARY PLACENTA UTERUS VAGINA
AORTA BLOOD VESSEL DIAPHRAGM HEART ATRIUM HEART MUSCLE HEART VALVE HEART WALL PERIPHERAL VASCULATURE SKELETAL MUSCLE SMOOTH MUSCLE SMOOTH MUSCLE (INTESTINE) SMOOTH MUSCLE (UTERUS)
ABDOMINAL ADIPOSE TISSUE ADIPOSE TISSUE BROWN ADIPOSE TISSUE DURA MATER EAR CANAL EAR CARTILAGE JOINT CARTILAGE MENINGES ORBITAL ADIPOSE TISSUE PERICARDIUM PERITONEUM PLEURA SUBCUTANEOUS ADIPOSE TISSUE SYNOVIAL TISSUE VAGUS NERVE
EYE LID SKIN SKIN (BACK) SKIN (GROIN)
APPENDIX BONE MARROW LYMPH NODE SPLEEN THYMUS TONSIL
HumanMacaqueMouseRatPig
Protein evolution
Brain
Evolutionary methods
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:186.9 nTPM
HPA Brain:240.7 nTPM
GTEx:186.9 nTPM
FANTOM5:264.5 Scaled Tags Per Million
Rat:63.1 nTPM
Pig:51.9 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA026494Antibody CAB001448
Glial cells Not detectedNot detected
Neuronal cells Not detectedNot detected





HIPPOCAMPAL FORMATION - PROTEINTALKS DB MS
Median intensity 12229
Sample Intensity
Hippocampal formation_01
ND
Hippocampal formation_02
ND
Hippocampal formation_03
ND
Hippocampal formation_04
10833
Hippocampal formation_05
18515
Hippocampal formation_06
12229

HIPPOCAMPAL FORMATION - HPA Brain Stereo-seq

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

240.7
Sample id Sample description nTPM
Dentate gyrus
nTPM: 194.8
2010 Male, age 76, both hemispheres 234.5
2528 Male, age 74, both hemispheres 209.5
1927 Female, age 91, both hemispheres 204.8
2246 Female, age 85, both hemispheres 203.8
2530 Female, age 94, left hemisphere 170.8
2531 Female, age 67, both hemispheres 145.3
Entorhinal gyrus
nTPM: 185.6
2117 Female, age 91, right hemisphere 222.7
1938 Female, age 85, left hemisphere 215.8
2764 Male, age 80, right hemisphere 189.4
1787 Male, age 76, left hemisphere 186.6
2686 Male, age 75, right hemisphere 178.2
2613 Female, age 94, left hemisphere 121.2
Hippocampus, CA1
nTPM: 230.4
2527 Male, age 74, both hemispheres 258.7
2045 Male, age 76, both hemispheres 241.9
2749 Male, age 80, left hemisphere 239.5
1873 Female, age 85, both hemispheres 209.8
2082 Female, age 91, right hemisphere 202.1
Hippocampus, CA2
nTPM: 236.1
2249 Male, age 74, both hemispheres 331.6
1892 Male, age 76, both hemispheres 236.3
1940 Female, age 85, left hemisphere 222.7
1963 Male, age 80, left hemisphere 219.0
2113 Female, age 91, right hemisphere 205.7
2437 Female, age 94, left hemisphere 201.2
Hippocampus, CA3
nTPM: 240.7
2436 Male, age 74, both hemispheres 410.2
1867 Male, age 76, both hemispheres 285.0
2137 Male, age 80, left hemisphere 237.6
1891 Female, age 85, both hemispheres 186.8
2620 Female, age 94, left hemisphere 167.8
2861 Female, age 67, both hemispheres 156.7
Parahippocampal cortex
nTPM: 208.4
2018 Male, age 76, both hemispheres 299.3
1850 Male, age 80, both hemispheres 236.1
1933 Female, age 85, both hemispheres 226.1
2250 Female, age 67, right hemisphere 212.2
2692 Male, age 74, both hemispheres 207.4
2245 Female, age 91, both hemispheres 201.8
1990 Female, age 91, right hemisphere 184.3
2693 Female, age 94, both hemispheres 175.8
2622 Female, age 67, right hemisphere 173.7
2532 Female, age 72, left hemisphere 167.7
Perirhinal gyrus
nTPM: 212.7
1847 Female, age 91, left hemisphere 234.3
1794 Male, age 80, right hemisphere 227.6
1841 Female, age 85, right hemisphere 226.7
2521 Female, age 94, right hemisphere 215.5
2848 Male, age 76, right hemisphere 159.6
Subiculum
nTPM: 215.0
2619 Male, age 74, both hemispheres 242.1
2042 Male, age 76, both hemispheres 239.4
2729 Female, age 91, right hemisphere 224.3
1901 Male, age 80, both hemispheres 208.4
1977 Female, age 85, both hemispheres 191.2
2438 Female, age 94, left hemisphere 184.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

186.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 186.9
Samples: 255

Max nTPM: 535.9
Min nTPM: 75.0
Std nTPM: 74.1
Median nTPM: 167.5
GTEX-1JMQL-0011-R1a-SM-F3K4U 50-59 years, female 535.9
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 529.0
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 524.3
GTEX-ZYFD-0011-R1b-SM-GRR1T 50-59 years, male 489.2
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 440.3
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 406.0
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 365.7
GTEX-1JN6P-0011-R1b-SM-G8LL3 60-69 years, male 363.0
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 352.1
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 351.6
GTEX-1LVAO-0011-R1a-SM-F649O 60-69 years, male 337.7
GTEX-12696-0011-R1a-SM-GHWPW 60-69 years, male 337.6
GTEX-ZAJG-0011-R1a-SM-GQ1CV 50-59 years, female 337.1
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 330.9
GTEX-1192X-0011-R1b-SM-GI4VU 50-59 years, male 330.0
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 328.3
GTEX-1LKK1-0011-R1b-SM-F2TAF 50-59 years, female 328.2
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 324.5
GTEX-1PWST-0011-R1b-SM-F2I38 70-79 years, male 322.3
GTEX-ZZPT-0011-R1b-SM-GNINL 50-59 years, male 309.9
GTEX-11TTK-0011-R1b-SM-GIN92 60-69 years, female 309.8
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 308.8
GTEX-13PVQ-0011-R1b-SM-GJ3RQ 50-59 years, male 305.1
GTEX-12ZZZ-0011-R1a-SM-GIN8I 60-69 years, male 289.1
GTEX-1P4AB-0011-R1b-SM-F2TAV 50-59 years, male 279.8
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 273.8
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 265.2
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 253.7
GTEX-1RNSC-0011-R1b-SM-F342D 60-69 years, male 253.0
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 252.9
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 252.4
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 249.4
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 247.8
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 247.2
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 245.8
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 245.2
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 243.6
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 242.6
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 240.8
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 237.1
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 236.2
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 235.6
GTEX-1N2EF-0011-R1a-SM-F2TAT 60-69 years, male 232.1
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 228.1
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 227.2
GTEX-15EO6-0011-R1b-SM-H7OGP 50-59 years, male 226.7
GTEX-1JMQK-0011-R1a-SM-F6484 60-69 years, male 225.3
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 224.0
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 221.1
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 220.2
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 220.0
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 217.3
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 217.0
GTEX-13VXU-0011-R1a-SM-GINAT 50-59 years, male 213.6
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 213.4
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 213.4
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 213.1
GTEX-ZYY3-0011-R1b-SM-GPI92 60-69 years, female 213.1
GTEX-12ZZY-0011-R1a-SM-GIN9E 60-69 years, male 212.6
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 212.6
GTEX-1KANB-0011-R1a-SM-F3K5M 50-59 years, male 212.6
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 212.0
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 211.9
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 211.5
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 211.4
GTEX-1JMPZ-0011-R1b-SM-F6497 30-39 years, male 211.1
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 210.4
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 209.9
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 209.7
GTEX-1QMI2-0011-R1b-SM-F3K5Q 60-69 years, male 209.5
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 209.4
GTEX-1R9PO-0011-R1b-SM-F2I2G 60-69 years, female 207.7
GTEX-1NV8Z-0011-R1b-SM-F647K 60-69 years, male 204.7
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 203.4
GTEX-1MJK2-0011-R1b-SM-F649H 50-59 years, male 202.7
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 202.4
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 201.7
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 201.7
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 200.6
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 199.1
GTEX-11OF3-0011-R1b-SM-H65ZT 60-69 years, male 198.5
GTEX-1I19N-0011-R1b-SM-GOR1A 70-79 years, male 198.3
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 197.9
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 197.6
GTEX-1N2EE-0011-R1a-SM-F3K5K 60-69 years, male 196.7
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 196.1
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 194.8
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 193.7
GTEX-1LSNL-0011-R1a-SM-F3K51 50-59 years, male 193.2
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 192.8
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 191.7
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 191.0
GTEX-1JMOU-0011-R1b-SM-F341B 60-69 years, female 190.3
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 189.5
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 188.7
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 185.7
GTEX-1MA7X-0011-R1b-SM-F2TAB 60-69 years, male 184.5
GTEX-1OJC4-0011-R1a-SM-F2TAZ 50-59 years, female 183.6
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 182.4
GTEX-11H98-0011-R1a-SM-GIN8O 50-59 years, male 182.2
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 182.0
GTEX-1JJEA-0011-R1b-SM-F6495 60-69 years, male 182.0
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 181.3
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 181.3
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 181.0
GTEX-1LH75-0011-R1a-SM-F341Y 50-59 years, female 181.0
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 181.0
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 180.5
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 180.3
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 178.9
GTEX-1PIIG-0011-R1a-SM-F649P 30-39 years, male 178.1
GTEX-RU72-0011-R1A-SM-HAUZG 50-59 years, female 178.1
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 177.6
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 176.9
GTEX-117XS-0011-R1b-SM-GJ3PQ 60-69 years, male 175.6
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 173.8
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 172.6
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 172.0
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 171.5
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 171.2
GTEX-14E6C-0011-R1a-SM-G8W86 40-49 years, male 171.2
GTEX-15SHU-0011-R1b-SM-H6Q7U 40-49 years, female 171.1
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 170.5
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 170.0
GTEX-15DYW-0011-R1a-SM-H6Q6Q 60-69 years, female 169.6
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 169.5
GTEX-1R9K4-0011-R1a-SM-F342F 60-69 years, male 167.7
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 167.5
GTEX-ZAK1-0011-R1a-SM-GRR1R 50-59 years, female 167.5
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 166.4
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 165.0
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 164.7
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 164.6
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 164.3
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 164.2
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 164.0
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 163.5
GTEX-1RDX4-0011-R1a-SM-F3K5H 50-59 years, female 163.2
GTEX-1F52S-0011-R1a-SM-9OSX9 60-69 years, female 162.7
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 162.4
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 162.1
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 162.0
GTEX-1RQED-0011-R1a-SM-F3K5W 60-69 years, male 161.6
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 161.4
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 161.4
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 161.2
GTEX-1LSVX-0011-R1a-SM-F3K5F 60-69 years, male 161.0
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 160.8
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 159.9
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 159.1
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 159.1
GTEX-11PRG-0011-R1b-SM-H7OHD 50-59 years, male 158.9
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 158.2
GTEX-1JMQJ-0011-R1b-SM-F2T9P 50-59 years, male 158.0
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 157.6
GTEX-11DYG-0011-R1a-SM-GI4X6 60-69 years, male 157.5
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 157.3
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 155.9
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 155.2
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 154.8
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 154.7
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 154.2
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 153.9
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 153.8
GTEX-14BMV-0011-R1b-SM-G9ERL 50-59 years, male 153.6
GTEX-12WSA-0011-R1b-SM-GI4VI 60-69 years, male 153.4
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 151.6
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 150.1
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 149.3
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 149.3
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 149.2
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 149.0
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 148.9
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 148.4
GTEX-1LVA9-0011-R1b-SM-F2TB5 50-59 years, male 147.7
GTEX-11DXY-0011-R1b-SM-GI4VQ 60-69 years, male 147.6
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 146.6
GTEX-1O9I2-0011-R1a-SM-F2TAW 50-59 years, male 146.0
GTEX-11NV4-0011-R1a-SM-GINAK 60-69 years, male 145.9
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 145.3
GTEX-1N5O9-0011-R1b-SM-F3K4W 60-69 years, male 144.6
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 144.0
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 143.6
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 143.4
GTEX-1MCQQ-0011-R1a-SM-F341G 60-69 years, male 143.0
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 142.0
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 140.9
GTEX-1JMLX-0011-R1b-SM-G9ERV 50-59 years, male 139.6
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 139.4
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 139.2
GTEX-11ZUS-0011-R1a-SM-GI4W7 30-39 years, male 138.3
GTEX-13SLX-0011-R1a-SM-H6Q8N 50-59 years, female 138.3
GTEX-1KWVE-0011-R1a-SM-F649B 30-39 years, male 137.9
GTEX-1KD4Q-0011-R1a-SM-F3K4Z 40-49 years, male 137.8
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 137.6
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 137.6
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 137.3
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 137.1
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 135.8
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 135.7
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 134.5
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 134.4
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 134.3
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 134.2
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 133.8
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 133.4
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 133.2
GTEX-1PPGY-0011-R1b-SM-G8LN3 60-69 years, male 133.1
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 132.7
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 132.6
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 132.5
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 132.3
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 131.6
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 131.5
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 130.4
GTEX-13PLJ-0011-R1a-SM-GJ3QF 60-69 years, female 129.7
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 128.5
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 127.5
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 127.1
GTEX-1POEN-0011-R1b-SM-F3K3K 30-39 years, female 126.8
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 126.7
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 126.5
GTEX-15RJE-0011-R1b-SM-H6Q7N 40-49 years, male 125.9
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 125.0
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 124.9
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 124.4
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 124.4
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 124.2
GTEX-1JJ6O-0011-R1b-SM-F2I2M 60-69 years, male 123.0
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 121.5
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 121.5
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 121.1
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 120.7
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 119.5
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 117.7
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 116.0
GTEX-1RQEC-0011-R1b-SM-F2I2E 60-69 years, male 115.2
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 113.6
GTEX-12126-0011-R1a-SM-GJ3Q8 20-29 years, male 113.0
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 110.7
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 110.6
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 110.5
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 109.7
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 109.5
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 108.8
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 105.9
GTEX-1QP6S-0011-R1b-SM-F3K59 40-49 years, male 105.8
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 102.3
GTEX-14DAQ-0011-R1a-SM-G8W85 60-69 years, female 102.2
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 97.6
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 93.6
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 86.6
GTEX-14JFF-0011-R1b-SM-G8W88 60-69 years, male 81.2
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 75.1
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 75.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

264.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 264.5
FF:10169-103B7 60 years, female 334.4
FF:10153-102I9 76 years, female 194.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

51.9
Pig sample Sample description nTPM
Subiculum
nTPM: 43.5
Samples: 4

Max nTPM: 53.4
Min nTPM: 39.0
Sample A Female 53.4
Sample B Female 40.1
Sample C Male 39.0
Sample D Male 41.6
Dorsal hippocampus
nTPM: 51.4
Samples: 4

Max nTPM: 72.0
Min nTPM: 23.6
Sample A Female 72.0
Sample B Female 50.3
Sample C Male 59.8
Sample D Male 23.6
Entorhinal cortex
nTPM: 41.9
Samples: 4

Max nTPM: 55.3
Min nTPM: 26.4
Sample A Female 55.3
Sample B Female 44.4
Sample C Male 41.7
Sample D Male 26.4
Ventral hippocampus
nTPM: 51.9
Samples: 4

Max nTPM: 63.9
Min nTPM: 39.4
Sample A Female 63.9
Sample B Female 39.4
Sample C Male 62.9
Sample D Male 41.4

HIPPOCAMPAL FORMATION - Rat RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

63.1
Rat sample Sample description nTPM
Entorhinal cortex
nTPM: 57.6
Samples: 4

Max nTPM: 62.6
Min nTPM: 52.5
Sample A 55.8
Sample A 52.5
Sample A 62.6
Sample B 59.5
Ventral hippocampus
nTPM: 63.1
Samples: 4

Max nTPM: 71.5
Min nTPM: 53.1
Sample A 66.2
Sample A 53.1
Sample A 71.5
Sample A 61.4

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