A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
3.4
nTPM
Monaco:
18.8
nTPM
Schmiedel:
25.7
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
3.4
HPA sample
nTPM
Memory B-cell nTPM: 2.4
Samples: 6
Max nTPM: 3.7
Min nTPM: 1.0
P10809_1017
3.0
P10809_1025
1.1
P10809_1044
2.8
P10809_1063
1.0
P10809_1092
3.7
P10809_1105
2.6
Naive B-cell nTPM: 3.4
Samples: 6
Max nTPM: 5.4
Min nTPM: 0.2
P10809_1011
5.4
P10809_1029
4.5
P10809_1048
0.2
P10809_1067
4.0
P10809_1091
3.8
P10809_1104
2.4
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
18.8
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 11.5
Samples: 4
Max nTPM: 14.7
Min nTPM: 9.2
RHH5310_R3677
14.7
RHH5218_R3590
11.4
RHH5247_R3619
9.2
RHH5276_R3648
10.9
Naive B-cell nTPM: 18.0
Samples: 4
Max nTPM: 22.6
Min nTPM: 12.9
RHH5308_R3675
12.9
RHH5216_R3588
19.8
RHH5245_R3617
22.6
RHH5274_R3646
16.6
Non-switched memory B-cell nTPM: 18.8
Samples: 4
Max nTPM: 28.1
Min nTPM: 12.1
RHH5309_R3676
12.1
RHH5217_R3589
18.1
RHH5246_R3618
28.1
RHH5275_R3647
16.8
Plasmablast nTPM: 11.9
Samples: 4
Max nTPM: 13.8
Min nTPM: 9.7
RHH5312_R3679
13.8
RHH5220_R3592
10.7
RHH5249_R3621
13.2
RHH5278_R3650
9.7
Switched memory B-cell nTPM: 14.5
Samples: 4
Max nTPM: 22.2
Min nTPM: 7.0
RHH5311_R3678
7.0
RHH5219_R3591
21.1
RHH5248_R3620
7.7
RHH5277_R3649
22.2
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
25.7
Schmiedel sample id
TPM
Naive B-cell TPM: 25.7
Samples: 91
Max TPM: 40.8
Min TPM: 17.4
B_CELL_NAIVE_1
40.8
B_CELL_NAIVE_2
36.4
B_CELL_NAIVE_3
34.5
B_CELL_NAIVE_4
34.4
B_CELL_NAIVE_5
34.3
B_CELL_NAIVE_6
34.3
B_CELL_NAIVE_7
33.3
B_CELL_NAIVE_8
32.7
B_CELL_NAIVE_9
32.6
B_CELL_NAIVE_10
32.0
B_CELL_NAIVE_11
31.5
B_CELL_NAIVE_12
31.2
B_CELL_NAIVE_13
31.1
B_CELL_NAIVE_14
31.0
B_CELL_NAIVE_15
29.7
B_CELL_NAIVE_16
29.7
B_CELL_NAIVE_17
29.4
B_CELL_NAIVE_18
29.2
B_CELL_NAIVE_19
29.2
B_CELL_NAIVE_20
29.1
B_CELL_NAIVE_21
29.1
B_CELL_NAIVE_22
28.8
B_CELL_NAIVE_23
28.4
B_CELL_NAIVE_24
28.2
B_CELL_NAIVE_25
27.9
B_CELL_NAIVE_26
27.4
B_CELL_NAIVE_27
27.3
B_CELL_NAIVE_28
27.3
B_CELL_NAIVE_29
26.8
B_CELL_NAIVE_30
26.8
B_CELL_NAIVE_31
26.8
B_CELL_NAIVE_32
26.8
B_CELL_NAIVE_33
26.7
B_CELL_NAIVE_34
26.7
B_CELL_NAIVE_35
26.6
B_CELL_NAIVE_36
26.6
B_CELL_NAIVE_37
26.4
B_CELL_NAIVE_38
26.4
B_CELL_NAIVE_39
26.3
B_CELL_NAIVE_40
26.2
B_CELL_NAIVE_41
25.7
B_CELL_NAIVE_42
25.7
B_CELL_NAIVE_43
25.4
B_CELL_NAIVE_44
25.3
B_CELL_NAIVE_45
25.2
B_CELL_NAIVE_46
25.1
B_CELL_NAIVE_47
25.0
B_CELL_NAIVE_48
24.9
B_CELL_NAIVE_49
24.8
B_CELL_NAIVE_50
24.5
B_CELL_NAIVE_51
24.4
B_CELL_NAIVE_52
24.2
B_CELL_NAIVE_53
24.2
B_CELL_NAIVE_54
24.1
B_CELL_NAIVE_55
23.8
B_CELL_NAIVE_56
23.7
B_CELL_NAIVE_57
23.7
B_CELL_NAIVE_58
23.7
B_CELL_NAIVE_59
23.6
B_CELL_NAIVE_60
23.5
B_CELL_NAIVE_61
23.4
B_CELL_NAIVE_62
23.3
B_CELL_NAIVE_63
23.2
B_CELL_NAIVE_64
23.1
B_CELL_NAIVE_65
22.9
B_CELL_NAIVE_66
22.9
B_CELL_NAIVE_67
22.7
B_CELL_NAIVE_68
22.4
B_CELL_NAIVE_69
22.4
B_CELL_NAIVE_70
22.1
B_CELL_NAIVE_71
22.0
B_CELL_NAIVE_72
21.9
B_CELL_NAIVE_73
21.9
B_CELL_NAIVE_74
21.5
B_CELL_NAIVE_75
21.5
B_CELL_NAIVE_76
21.4
B_CELL_NAIVE_77
21.4
B_CELL_NAIVE_78
21.3
B_CELL_NAIVE_79
21.0
B_CELL_NAIVE_80
20.9
B_CELL_NAIVE_81
20.8
B_CELL_NAIVE_82
20.7
B_CELL_NAIVE_83
20.6
B_CELL_NAIVE_84
20.5
B_CELL_NAIVE_85
20.3
B_CELL_NAIVE_86
20.2
B_CELL_NAIVE_87
20.0
B_CELL_NAIVE_88
19.9
B_CELL_NAIVE_89
19.4
B_CELL_NAIVE_90
19.1
B_CELL_NAIVE_91
17.4
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