A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
5.9
nTPM
Monaco:
29.3
nTPM
Schmiedel:
33.0
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
5.9
HPA sample
nTPM
Classical monocyte nTPM: 5.4
Samples: 6
Max nTPM: 7.6
Min nTPM: 3.8
P10809_1003
7.6
P10809_1020
5.1
P10809_1039
3.8
P10809_1058
7.1
P10809_1080
4.6
P10809_1107
4.4
Intermediate monocyte nTPM: 5.7
Samples: 6
Max nTPM: 12.1
Min nTPM: 3.1
P10809_1004
5.3
P10809_1023
5.2
P10809_1042
3.1
P10809_1061
12.1
P10809_1081
3.3
P10809_1108
5.0
Non-classical monocyte nTPM: 5.9
Samples: 5
Max nTPM: 8.2
Min nTPM: 4.7
P10809_1005
5.4
P10809_1053
6.1
P10809_1072
8.2
P10809_1082
4.7
P10809_1109
5.1
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
29.3
Monaco sample
nTPM
Classical monocyte nTPM: 23.8
Samples: 4
Max nTPM: 26.9
Min nTPM: 22.3
RHH5313_R3680
26.9
RHH5221_R3593
23.0
RHH5250_R3622
22.9
RHH5279_R3651
22.3
Intermediate monocyte nTPM: 24.0
Samples: 4
Max nTPM: 26.3
Min nTPM: 21.3
RHH5314_R3681
22.8
RHH5222_R3594
26.3
RHH5251_R3623
21.3
RHH5280_R3652
25.4
Non-classical monocyte nTPM: 29.3
Samples: 4
Max nTPM: 32.6
Min nTPM: 27.2
RHH5315_R3682
28.5
RHH5223_R3595
28.8
RHH5252_R3624
27.2
RHH5281_R3653
32.6
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
33.0
Schmiedel sample id
TPM
Classical monocyte TPM: 24.3
Samples: 91
Max TPM: 30.7
Min TPM: 16.6
MONOCYTES_1
30.7
MONOCYTES_2
30.7
MONOCYTES_3
30.2
MONOCYTES_4
29.6
MONOCYTES_5
29.2
MONOCYTES_6
29.1
MONOCYTES_7
28.4
MONOCYTES_8
28.4
MONOCYTES_9
28.4
MONOCYTES_10
28.4
MONOCYTES_11
28.3
MONOCYTES_12
28.2
MONOCYTES_13
28.2
MONOCYTES_14
27.8
MONOCYTES_15
27.4
MONOCYTES_16
27.1
MONOCYTES_17
27.1
MONOCYTES_18
27.0
MONOCYTES_19
26.9
MONOCYTES_20
26.9
MONOCYTES_21
26.7
MONOCYTES_22
26.6
MONOCYTES_23
26.3
MONOCYTES_24
26.2
MONOCYTES_25
26.2
MONOCYTES_26
26.2
MONOCYTES_27
26.2
MONOCYTES_28
26.1
MONOCYTES_29
26.0
MONOCYTES_30
25.9
MONOCYTES_31
25.8
MONOCYTES_32
25.7
MONOCYTES_33
25.7
MONOCYTES_34
25.5
MONOCYTES_35
25.3
MONOCYTES_36
25.3
MONOCYTES_37
25.3
MONOCYTES_38
25.2
MONOCYTES_39
25.2
MONOCYTES_40
25.2
MONOCYTES_41
25.1
MONOCYTES_42
25.1
MONOCYTES_43
25.0
MONOCYTES_44
24.4
MONOCYTES_45
24.2
MONOCYTES_46
23.9
MONOCYTES_47
23.7
MONOCYTES_48
23.6
MONOCYTES_49
23.5
MONOCYTES_50
23.5
MONOCYTES_51
23.4
MONOCYTES_52
23.4
MONOCYTES_53
23.4
MONOCYTES_54
23.2
MONOCYTES_55
23.2
MONOCYTES_56
23.1
MONOCYTES_57
23.1
MONOCYTES_58
23.1
MONOCYTES_59
22.9
MONOCYTES_60
22.9
MONOCYTES_61
22.8
MONOCYTES_62
22.8
MONOCYTES_63
22.6
MONOCYTES_64
22.6
MONOCYTES_65
22.6
MONOCYTES_66
22.6
MONOCYTES_67
22.5
MONOCYTES_68
22.3
MONOCYTES_69
22.2
MONOCYTES_70
22.1
MONOCYTES_71
22.0
MONOCYTES_72
22.0
MONOCYTES_73
21.9
MONOCYTES_74
21.8
MONOCYTES_75
21.8
MONOCYTES_76
21.7
MONOCYTES_77
21.4
MONOCYTES_78
21.3
MONOCYTES_79
21.3
MONOCYTES_80
21.3
MONOCYTES_81
20.9
MONOCYTES_82
20.6
MONOCYTES_83
20.4
MONOCYTES_84
20.4
MONOCYTES_85
20.3
MONOCYTES_86
20.2
MONOCYTES_87
19.6
MONOCYTES_88
18.4
MONOCYTES_89
17.8
MONOCYTES_90
16.9
MONOCYTES_91
16.6
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Non-classical monocyte TPM: 33.0
Samples: 90
Max TPM: 52.5
Min TPM: 23.6
M2_1
52.5
M2_2
46.2
M2_3
43.8
M2_4
42.9
M2_5
42.3
M2_6
42.3
M2_7
42.2
M2_8
41.4
M2_9
40.7
M2_10
40.6
M2_11
40.2
M2_12
39.9
M2_13
38.8
M2_14
38.8
M2_15
38.1
M2_16
38.0
M2_17
37.8
M2_18
37.6
M2_19
37.1
M2_20
36.2
M2_21
36.2
M2_22
36.1
M2_23
35.1
M2_24
35.1
M2_25
35.1
M2_26
34.8
M2_27
34.7
M2_28
34.6
M2_29
34.6
M2_30
34.3
M2_31
34.2
M2_32
34.0
M2_33
34.0
M2_34
33.7
M2_35
33.4
M2_36
33.2
M2_37
33.0
M2_38
32.9
M2_39
32.7
M2_40
32.6
M2_41
32.6
M2_42
32.4
M2_43
32.3
M2_44
32.3
M2_45
32.2
M2_46
32.2
M2_47
32.2
M2_48
32.0
M2_49
31.9
M2_50
31.8
M2_51
31.6
M2_52
31.4
M2_53
31.2
M2_54
30.9
M2_55
30.8
M2_56
30.8
M2_57
30.8
M2_58
30.6
M2_59
30.2
M2_60
30.0
M2_61
29.9
M2_62
29.9
M2_63
29.8
M2_64
29.4
M2_65
29.4
M2_66
29.3
M2_67
29.3
M2_68
29.3
M2_69
29.3
M2_70
29.2
M2_71
29.2
M2_72
29.1
M2_73
29.1
M2_74
29.0
M2_75
29.0
M2_76
28.6
M2_77
28.6
M2_78
28.5
M2_79
28.1
M2_80
28.1
M2_81
28.0
M2_82
27.1
M2_83
26.7
M2_84
26.0
M2_85
25.7
M2_86
25.3
M2_87
25.3
M2_88
24.7
M2_89
24.1
M2_90
23.6
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