A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1.1
nTPM
Monaco:
17.5
nTPM
Schmiedel:
16.9
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1.1
HPA sample
nTPM
Classical monocyte nTPM: 1.1
Samples: 6
Max nTPM: 1.8
Min nTPM: 0.6
P10809_1003
1.2
P10809_1020
1.8
P10809_1039
0.6
P10809_1058
1.1
P10809_1080
0.9
P10809_1107
0.7
Intermediate monocyte nTPM: 1.1
Samples: 6
Max nTPM: 2.7
Min nTPM: 0.1
P10809_1004
1.0
P10809_1023
2.7
P10809_1042
1.2
P10809_1061
0.1
P10809_1081
1.3
P10809_1108
0.3
Non-classical monocyte nTPM: 0.9
Samples: 5
Max nTPM: 1.3
Min nTPM: 0.0
P10809_1005
1.3
P10809_1053
1.2
P10809_1072
0.0
P10809_1082
1.2
P10809_1109
0.6
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
17.5
Monaco sample
nTPM
Classical monocyte nTPM: 9.9
Samples: 4
Max nTPM: 12.7
Min nTPM: 7.2
RHH5313_R3680
12.7
RHH5221_R3593
10.2
RHH5250_R3622
7.2
RHH5279_R3651
9.3
Intermediate monocyte nTPM: 12.1
Samples: 4
Max nTPM: 17.4
Min nTPM: 9.8
RHH5314_R3681
9.8
RHH5222_R3594
10.3
RHH5251_R3623
17.4
RHH5280_R3652
11.0
Non-classical monocyte nTPM: 17.5
Samples: 4
Max nTPM: 19.4
Min nTPM: 15.4
RHH5315_R3682
17.0
RHH5223_R3595
18.2
RHH5252_R3624
15.4
RHH5281_R3653
19.4
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
16.9
Schmiedel sample id
TPM
Classical monocyte TPM: 8.5
Samples: 91
Max TPM: 13.3
Min TPM: 5.4
MONOCYTES_1
13.3
MONOCYTES_2
11.9
MONOCYTES_3
11.0
MONOCYTES_4
10.6
MONOCYTES_5
10.4
MONOCYTES_6
10.3
MONOCYTES_7
10.2
MONOCYTES_8
9.9
MONOCYTES_9
9.9
MONOCYTES_10
9.9
MONOCYTES_11
9.7
MONOCYTES_12
9.7
MONOCYTES_13
9.6
MONOCYTES_14
9.6
MONOCYTES_15
9.6
MONOCYTES_16
9.5
MONOCYTES_17
9.3
MONOCYTES_18
9.3
MONOCYTES_19
9.2
MONOCYTES_20
9.2
MONOCYTES_21
9.2
MONOCYTES_22
9.2
MONOCYTES_23
9.1
MONOCYTES_24
9.1
MONOCYTES_25
9.1
MONOCYTES_26
9.0
MONOCYTES_27
9.0
MONOCYTES_28
9.0
MONOCYTES_29
8.9
MONOCYTES_30
8.9
MONOCYTES_31
8.8
MONOCYTES_32
8.8
MONOCYTES_33
8.8
MONOCYTES_34
8.8
MONOCYTES_35
8.8
MONOCYTES_36
8.7
MONOCYTES_37
8.7
MONOCYTES_38
8.7
MONOCYTES_39
8.7
MONOCYTES_40
8.6
MONOCYTES_41
8.6
MONOCYTES_42
8.6
MONOCYTES_43
8.6
MONOCYTES_44
8.6
MONOCYTES_45
8.6
MONOCYTES_46
8.6
MONOCYTES_47
8.5
MONOCYTES_48
8.5
MONOCYTES_49
8.4
MONOCYTES_50
8.3
MONOCYTES_51
8.2
MONOCYTES_52
8.2
MONOCYTES_53
8.2
MONOCYTES_54
8.1
MONOCYTES_55
8.1
MONOCYTES_56
8.1
MONOCYTES_57
8.1
MONOCYTES_58
8.1
MONOCYTES_59
8.1
MONOCYTES_60
8.1
MONOCYTES_61
8.0
MONOCYTES_62
8.0
MONOCYTES_63
8.0
MONOCYTES_64
8.0
MONOCYTES_65
8.0
MONOCYTES_66
8.0
MONOCYTES_67
7.9
MONOCYTES_68
7.9
MONOCYTES_69
7.8
MONOCYTES_70
7.8
MONOCYTES_71
7.8
MONOCYTES_72
7.8
MONOCYTES_73
7.8
MONOCYTES_74
7.7
MONOCYTES_75
7.6
MONOCYTES_76
7.6
MONOCYTES_77
7.6
MONOCYTES_78
7.6
MONOCYTES_79
7.4
MONOCYTES_80
7.4
MONOCYTES_81
7.3
MONOCYTES_82
7.2
MONOCYTES_83
7.2
MONOCYTES_84
7.1
MONOCYTES_85
7.1
MONOCYTES_86
6.8
MONOCYTES_87
6.6
MONOCYTES_88
6.5
MONOCYTES_89
6.1
MONOCYTES_90
5.8
MONOCYTES_91
5.4
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Non-classical monocyte TPM: 16.9
Samples: 90
Max TPM: 24.1
Min TPM: 12.0
M2_1
24.1
M2_2
21.7
M2_3
21.2
M2_4
20.2
M2_5
20.2
M2_6
19.9
M2_7
19.5
M2_8
19.4
M2_9
19.3
M2_10
19.3
M2_11
19.2
M2_12
19.1
M2_13
19.1
M2_14
18.8
M2_15
18.7
M2_16
18.5
M2_17
18.5
M2_18
18.4
M2_19
18.2
M2_20
18.2
M2_21
18.2
M2_22
18.2
M2_23
18.0
M2_24
18.0
M2_25
18.0
M2_26
17.8
M2_27
17.8
M2_28
17.8
M2_29
17.8
M2_30
17.8
M2_31
17.8
M2_32
17.7
M2_33
17.7
M2_34
17.7
M2_35
17.6
M2_36
17.5
M2_37
17.4
M2_38
17.4
M2_39
17.3
M2_40
17.2
M2_41
17.2
M2_42
17.1
M2_43
17.1
M2_44
17.0
M2_45
17.0
M2_46
17.0
M2_47
16.9
M2_48
16.9
M2_49
16.8
M2_50
16.8
M2_51
16.6
M2_52
16.6
M2_53
16.4
M2_54
16.4
M2_55
16.4
M2_56
16.3
M2_57
16.2
M2_58
16.1
M2_59
16.1
M2_60
16.0
M2_61
16.0
M2_62
16.0
M2_63
15.8
M2_64
15.8
M2_65
15.7
M2_66
15.7
M2_67
15.7
M2_68
15.6
M2_69
15.6
M2_70
15.5
M2_71
15.5
M2_72
15.3
M2_73
15.2
M2_74
15.2
M2_75
15.0
M2_76
14.9
M2_77
14.9
M2_78
14.8
M2_79
14.8
M2_80
14.6
M2_81
14.4
M2_82
14.2
M2_83
14.0
M2_84
14.0
M2_85
13.6
M2_86
13.5
M2_87
13.4
M2_88
13.3
M2_89
12.4
M2_90
12.0
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