A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
31.1
nTPM
Monaco:
62.8
nTPM
Schmiedel:
44.1
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
31.1
HPA sample
nTPM
Memory B-cell nTPM: 31.1
Samples: 6
Max nTPM: 37.5
Min nTPM: 20.0
P10809_1017
20.0
P10809_1025
35.6
P10809_1044
29.9
P10809_1063
29.1
P10809_1092
34.5
P10809_1105
37.5
Naive B-cell nTPM: 26.5
Samples: 6
Max nTPM: 31.8
Min nTPM: 15.5
P10809_1011
15.5
P10809_1029
24.6
P10809_1048
30.4
P10809_1067
25.3
P10809_1091
31.8
P10809_1104
31.2
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
62.8
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 54.1
Samples: 4
Max nTPM: 67.3
Min nTPM: 35.5
RHH5310_R3677
65.4
RHH5218_R3590
67.3
RHH5247_R3619
48.3
RHH5276_R3648
35.5
Naive B-cell nTPM: 61.6
Samples: 4
Max nTPM: 97.6
Min nTPM: 34.8
RHH5308_R3675
56.3
RHH5216_R3588
97.6
RHH5245_R3617
34.8
RHH5274_R3646
57.6
Non-switched memory B-cell nTPM: 62.8
Samples: 4
Max nTPM: 81.8
Min nTPM: 39.2
RHH5309_R3676
63.7
RHH5217_R3589
81.8
RHH5246_R3618
66.5
RHH5275_R3647
39.2
Plasmablast nTPM: 61.3
Samples: 4
Max nTPM: 80.9
Min nTPM: 44.5
RHH5312_R3679
70.5
RHH5220_R3592
80.9
RHH5249_R3621
49.1
RHH5278_R3650
44.5
Switched memory B-cell nTPM: 59.0
Samples: 4
Max nTPM: 77.8
Min nTPM: 44.0
RHH5311_R3678
62.7
RHH5219_R3591
77.8
RHH5248_R3620
51.6
RHH5277_R3649
44.0
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
44.1
Schmiedel sample id
TPM
Naive B-cell TPM: 44.1
Samples: 91
Max TPM: 76.9
Min TPM: 29.9
B_CELL_NAIVE_1
76.9
B_CELL_NAIVE_2
67.9
B_CELL_NAIVE_3
64.2
B_CELL_NAIVE_4
63.8
B_CELL_NAIVE_5
62.8
B_CELL_NAIVE_6
62.3
B_CELL_NAIVE_7
61.8
B_CELL_NAIVE_8
59.8
B_CELL_NAIVE_9
59.3
B_CELL_NAIVE_10
57.7
B_CELL_NAIVE_11
54.4
B_CELL_NAIVE_12
54.3
B_CELL_NAIVE_13
53.2
B_CELL_NAIVE_14
53.1
B_CELL_NAIVE_15
51.1
B_CELL_NAIVE_16
50.4
B_CELL_NAIVE_17
50.1
B_CELL_NAIVE_18
49.7
B_CELL_NAIVE_19
49.3
B_CELL_NAIVE_20
48.6
B_CELL_NAIVE_21
48.5
B_CELL_NAIVE_22
48.2
B_CELL_NAIVE_23
47.4
B_CELL_NAIVE_24
47.4
B_CELL_NAIVE_25
47.2
B_CELL_NAIVE_26
46.6
B_CELL_NAIVE_27
46.2
B_CELL_NAIVE_28
45.5
B_CELL_NAIVE_29
45.4
B_CELL_NAIVE_30
45.4
B_CELL_NAIVE_31
45.3
B_CELL_NAIVE_32
44.7
B_CELL_NAIVE_33
44.5
B_CELL_NAIVE_34
44.4
B_CELL_NAIVE_35
44.4
B_CELL_NAIVE_36
44.2
B_CELL_NAIVE_37
44.0
B_CELL_NAIVE_38
43.9
B_CELL_NAIVE_39
43.0
B_CELL_NAIVE_40
42.9
B_CELL_NAIVE_41
42.9
B_CELL_NAIVE_42
42.5
B_CELL_NAIVE_43
42.5
B_CELL_NAIVE_44
42.2
B_CELL_NAIVE_45
42.2
B_CELL_NAIVE_46
41.8
B_CELL_NAIVE_47
41.6
B_CELL_NAIVE_48
41.3
B_CELL_NAIVE_49
41.3
B_CELL_NAIVE_50
41.3
B_CELL_NAIVE_51
41.3
B_CELL_NAIVE_52
40.9
B_CELL_NAIVE_53
40.8
B_CELL_NAIVE_54
40.7
B_CELL_NAIVE_55
40.6
B_CELL_NAIVE_56
40.6
B_CELL_NAIVE_57
40.4
B_CELL_NAIVE_58
40.1
B_CELL_NAIVE_59
39.9
B_CELL_NAIVE_60
39.5
B_CELL_NAIVE_61
39.4
B_CELL_NAIVE_62
39.4
B_CELL_NAIVE_63
39.1
B_CELL_NAIVE_64
39.1
B_CELL_NAIVE_65
39.0
B_CELL_NAIVE_66
39.0
B_CELL_NAIVE_67
38.7
B_CELL_NAIVE_68
38.5
B_CELL_NAIVE_69
38.3
B_CELL_NAIVE_70
37.8
B_CELL_NAIVE_71
37.7
B_CELL_NAIVE_72
37.6
B_CELL_NAIVE_73
37.5
B_CELL_NAIVE_74
37.2
B_CELL_NAIVE_75
37.2
B_CELL_NAIVE_76
37.1
B_CELL_NAIVE_77
36.9
B_CELL_NAIVE_78
36.3
B_CELL_NAIVE_79
36.3
B_CELL_NAIVE_80
35.9
B_CELL_NAIVE_81
35.6
B_CELL_NAIVE_82
35.1
B_CELL_NAIVE_83
34.9
B_CELL_NAIVE_84
34.8
B_CELL_NAIVE_85
34.6
B_CELL_NAIVE_86
33.9
B_CELL_NAIVE_87
33.6
B_CELL_NAIVE_88
33.4
B_CELL_NAIVE_89
33.1
B_CELL_NAIVE_90
32.9
B_CELL_NAIVE_91
29.9
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The Human Protein Atlas project is funded
