A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
13.1
nTPM
Monaco:
97.6
nTPM
Schmiedel:
82.7
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
13.1
HPA sample
nTPM
Memory B-cell nTPM: 13.1
Samples: 6
Max nTPM: 22.1
Min nTPM: 6.2
P10809_1017
18.1
P10809_1025
13.3
P10809_1044
6.2
P10809_1063
10.4
P10809_1092
22.1
P10809_1105
8.4
Naive B-cell nTPM: 10.4
Samples: 6
Max nTPM: 13.8
Min nTPM: 4.1
P10809_1011
11.0
P10809_1029
11.9
P10809_1048
4.1
P10809_1067
9.5
P10809_1091
13.8
P10809_1104
11.8
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
97.6
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 80.9
Samples: 4
Max nTPM: 100.4
Min nTPM: 64.0
RHH5310_R3677
75.6
RHH5218_R3590
64.0
RHH5247_R3619
83.5
RHH5276_R3648
100.4
Naive B-cell nTPM: 77.5
Samples: 4
Max nTPM: 101.0
Min nTPM: 56.2
RHH5308_R3675
63.3
RHH5216_R3588
89.3
RHH5245_R3617
101.0
RHH5274_R3646
56.2
Non-switched memory B-cell nTPM: 97.7
Samples: 4
Max nTPM: 112.0
Min nTPM: 80.1
RHH5309_R3676
100.6
RHH5217_R3589
80.1
RHH5246_R3618
112.0
RHH5275_R3647
98.0
Plasmablast nTPM: 79.3
Samples: 4
Max nTPM: 108.8
Min nTPM: 60.3
RHH5312_R3679
80.8
RHH5220_R3592
60.3
RHH5249_R3621
67.3
RHH5278_R3650
108.8
Switched memory B-cell nTPM: 87.5
Samples: 4
Max nTPM: 102.5
Min nTPM: 74.9
RHH5311_R3678
84.3
RHH5219_R3591
74.9
RHH5248_R3620
102.5
RHH5277_R3649
88.2
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
82.7
Schmiedel sample id
TPM
Naive B-cell TPM: 82.7
Samples: 91
Max TPM: 100.1
Min TPM: 63.5
B_CELL_NAIVE_1
100.1
B_CELL_NAIVE_2
96.8
B_CELL_NAIVE_3
95.9
B_CELL_NAIVE_4
95.2
B_CELL_NAIVE_5
94.8
B_CELL_NAIVE_6
91.6
B_CELL_NAIVE_7
90.4
B_CELL_NAIVE_8
90.3
B_CELL_NAIVE_9
89.8
B_CELL_NAIVE_10
89.5
B_CELL_NAIVE_11
89.4
B_CELL_NAIVE_12
89.2
B_CELL_NAIVE_13
89.0
B_CELL_NAIVE_14
88.6
B_CELL_NAIVE_15
88.2
B_CELL_NAIVE_16
88.2
B_CELL_NAIVE_17
88.1
B_CELL_NAIVE_18
88.0
B_CELL_NAIVE_19
87.8
B_CELL_NAIVE_20
87.5
B_CELL_NAIVE_21
86.9
B_CELL_NAIVE_22
86.7
B_CELL_NAIVE_23
86.7
B_CELL_NAIVE_24
86.6
B_CELL_NAIVE_25
86.6
B_CELL_NAIVE_26
86.6
B_CELL_NAIVE_27
86.4
B_CELL_NAIVE_28
86.0
B_CELL_NAIVE_29
85.9
B_CELL_NAIVE_30
85.8
B_CELL_NAIVE_31
85.6
B_CELL_NAIVE_32
85.6
B_CELL_NAIVE_33
85.2
B_CELL_NAIVE_34
84.7
B_CELL_NAIVE_35
84.6
B_CELL_NAIVE_36
84.5
B_CELL_NAIVE_37
84.4
B_CELL_NAIVE_38
84.2
B_CELL_NAIVE_39
83.9
B_CELL_NAIVE_40
83.7
B_CELL_NAIVE_41
83.7
B_CELL_NAIVE_42
83.5
B_CELL_NAIVE_43
83.5
B_CELL_NAIVE_44
83.4
B_CELL_NAIVE_45
83.3
B_CELL_NAIVE_46
83.1
B_CELL_NAIVE_47
83.0
B_CELL_NAIVE_48
82.9
B_CELL_NAIVE_49
82.4
B_CELL_NAIVE_50
82.3
B_CELL_NAIVE_51
81.8
B_CELL_NAIVE_52
81.7
B_CELL_NAIVE_53
81.6
B_CELL_NAIVE_54
81.6
B_CELL_NAIVE_55
81.5
B_CELL_NAIVE_56
81.3
B_CELL_NAIVE_57
81.2
B_CELL_NAIVE_58
81.2
B_CELL_NAIVE_59
81.1
B_CELL_NAIVE_60
81.1
B_CELL_NAIVE_61
81.0
B_CELL_NAIVE_62
80.7
B_CELL_NAIVE_63
80.7
B_CELL_NAIVE_64
80.4
B_CELL_NAIVE_65
80.1
B_CELL_NAIVE_66
80.0
B_CELL_NAIVE_67
79.3
B_CELL_NAIVE_68
79.1
B_CELL_NAIVE_69
79.0
B_CELL_NAIVE_70
79.0
B_CELL_NAIVE_71
78.7
B_CELL_NAIVE_72
78.7
B_CELL_NAIVE_73
78.2
B_CELL_NAIVE_74
77.9
B_CELL_NAIVE_75
77.7
B_CELL_NAIVE_76
77.7
B_CELL_NAIVE_77
77.3
B_CELL_NAIVE_78
77.1
B_CELL_NAIVE_79
76.6
B_CELL_NAIVE_80
76.4
B_CELL_NAIVE_81
75.8
B_CELL_NAIVE_82
75.7
B_CELL_NAIVE_83
75.2
B_CELL_NAIVE_84
73.7
B_CELL_NAIVE_85
73.4
B_CELL_NAIVE_86
70.3
B_CELL_NAIVE_87
69.9
B_CELL_NAIVE_88
68.2
B_CELL_NAIVE_89
66.9
B_CELL_NAIVE_90
66.5
B_CELL_NAIVE_91
63.5
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The Human Protein Atlas project is funded
