A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
8.9
nTPM
Monaco:
52.0
nTPM
Schmiedel:
38.3
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
8.9
HPA sample
nTPM
Classical monocyte nTPM: 5.5
Samples: 6
Max nTPM: 8.0
Min nTPM: 4.3
P10809_1003
8.0
P10809_1020
6.0
P10809_1039
4.4
P10809_1058
5.3
P10809_1080
4.8
P10809_1107
4.3
Intermediate monocyte nTPM: 8.9
Samples: 6
Max nTPM: 17.7
Min nTPM: 5.5
P10809_1004
6.9
P10809_1023
5.9
P10809_1042
9.5
P10809_1061
17.7
P10809_1081
8.1
P10809_1108
5.5
Non-classical monocyte nTPM: 7.4
Samples: 5
Max nTPM: 10.1
Min nTPM: 5.4
P10809_1005
8.6
P10809_1053
10.1
P10809_1072
5.4
P10809_1082
6.5
P10809_1109
6.6
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
52.0
Monaco sample
nTPM
Classical monocyte nTPM: 38.3
Samples: 4
Max nTPM: 41.8
Min nTPM: 34.0
RHH5313_R3680
41.8
RHH5221_R3593
39.4
RHH5250_R3622
38.2
RHH5279_R3651
34.0
Intermediate monocyte nTPM: 43.8
Samples: 4
Max nTPM: 56.6
Min nTPM: 37.6
RHH5314_R3681
37.6
RHH5222_R3594
56.6
RHH5251_R3623
37.7
RHH5280_R3652
43.1
Non-classical monocyte nTPM: 52.0
Samples: 4
Max nTPM: 67.7
Min nTPM: 38.4
RHH5315_R3682
46.7
RHH5223_R3595
67.7
RHH5252_R3624
38.4
RHH5281_R3653
55.0
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
38.3
Schmiedel sample id
TPM
Classical monocyte TPM: 26.4
Samples: 91
Max TPM: 32.8
Min TPM: 21.3
MONOCYTES_1
32.8
MONOCYTES_2
32.2
MONOCYTES_3
31.8
MONOCYTES_4
31.3
MONOCYTES_5
30.6
MONOCYTES_6
30.3
MONOCYTES_7
29.8
MONOCYTES_8
29.7
MONOCYTES_9
29.4
MONOCYTES_10
29.3
MONOCYTES_11
29.2
MONOCYTES_12
29.2
MONOCYTES_13
29.2
MONOCYTES_14
29.0
MONOCYTES_15
28.9
MONOCYTES_16
28.8
MONOCYTES_17
28.7
MONOCYTES_18
28.5
MONOCYTES_19
28.2
MONOCYTES_20
28.2
MONOCYTES_21
28.1
MONOCYTES_22
28.1
MONOCYTES_23
28.1
MONOCYTES_24
28.0
MONOCYTES_25
28.0
MONOCYTES_26
28.0
MONOCYTES_27
28.0
MONOCYTES_28
27.8
MONOCYTES_29
27.8
MONOCYTES_30
27.4
MONOCYTES_31
27.4
MONOCYTES_32
27.3
MONOCYTES_33
27.2
MONOCYTES_34
27.1
MONOCYTES_35
27.0
MONOCYTES_36
26.9
MONOCYTES_37
26.9
MONOCYTES_38
26.9
MONOCYTES_39
26.9
MONOCYTES_40
26.9
MONOCYTES_41
26.8
MONOCYTES_42
26.6
MONOCYTES_43
26.6
MONOCYTES_44
26.6
MONOCYTES_45
26.5
MONOCYTES_46
26.4
MONOCYTES_47
26.3
MONOCYTES_48
26.2
MONOCYTES_49
26.2
MONOCYTES_50
26.1
MONOCYTES_51
26.1
MONOCYTES_52
26.0
MONOCYTES_53
25.6
MONOCYTES_54
25.6
MONOCYTES_55
25.6
MONOCYTES_56
25.5
MONOCYTES_57
25.4
MONOCYTES_58
25.2
MONOCYTES_59
25.2
MONOCYTES_60
25.2
MONOCYTES_61
25.1
MONOCYTES_62
25.0
MONOCYTES_63
25.0
MONOCYTES_64
24.7
MONOCYTES_65
24.6
MONOCYTES_66
24.5
MONOCYTES_67
24.5
MONOCYTES_68
24.4
MONOCYTES_69
24.3
MONOCYTES_70
24.2
MONOCYTES_71
24.1
MONOCYTES_72
24.0
MONOCYTES_73
24.0
MONOCYTES_74
24.0
MONOCYTES_75
24.0
MONOCYTES_76
23.7
MONOCYTES_77
23.7
MONOCYTES_78
23.6
MONOCYTES_79
23.6
MONOCYTES_80
23.5
MONOCYTES_81
23.4
MONOCYTES_82
23.4
MONOCYTES_83
23.3
MONOCYTES_84
23.3
MONOCYTES_85
23.0
MONOCYTES_86
23.0
MONOCYTES_87
22.8
MONOCYTES_88
22.6
MONOCYTES_89
21.5
MONOCYTES_90
21.4
MONOCYTES_91
21.3
Show allShow less
Non-classical monocyte TPM: 38.3
Samples: 90
Max TPM: 47.4
Min TPM: 31.4
M2_1
47.4
M2_2
47.1
M2_3
46.9
M2_4
46.9
M2_5
45.6
M2_6
44.8
M2_7
44.7
M2_8
44.4
M2_9
44.0
M2_10
43.7
M2_11
43.4
M2_12
43.3
M2_13
42.6
M2_14
42.4
M2_15
42.4
M2_16
42.1
M2_17
41.7
M2_18
41.5
M2_19
41.4
M2_20
40.8
M2_21
40.8
M2_22
40.5
M2_23
40.5
M2_24
40.5
M2_25
40.2
M2_26
40.0
M2_27
39.6
M2_28
39.6
M2_29
39.3
M2_30
39.3
M2_31
39.1
M2_32
38.9
M2_33
38.9
M2_34
38.9
M2_35
38.9
M2_36
38.7
M2_37
38.5
M2_38
38.5
M2_39
38.4
M2_40
38.4
M2_41
38.4
M2_42
38.2
M2_43
38.1
M2_44
37.9
M2_45
37.9
M2_46
37.9
M2_47
37.5
M2_48
37.5
M2_49
37.5
M2_50
37.4
M2_51
37.3
M2_52
37.2
M2_53
37.1
M2_54
37.0
M2_55
36.8
M2_56
36.7
M2_57
36.6
M2_58
36.6
M2_59
36.5
M2_60
36.5
M2_61
36.4
M2_62
36.3
M2_63
36.1
M2_64
36.1
M2_65
36.1
M2_66
36.0
M2_67
35.7
M2_68
35.7
M2_69
35.6
M2_70
35.3
M2_71
35.1
M2_72
35.1
M2_73
34.8
M2_74
34.8
M2_75
34.8
M2_76
34.7
M2_77
34.6
M2_78
34.6
M2_79
34.0
M2_80
34.0
M2_81
33.9
M2_82
33.9
M2_83
33.4
M2_84
33.4
M2_85
32.6
M2_86
32.5
M2_87
32.4
M2_88
32.0
M2_89
31.4
M2_90
31.4
Show allShow less
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.